RetrogeneDB ID: | retro_eeur_621 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_368309:52611..52859(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL24 | ||
Ensembl ID: | ENSEEUG00000009320 | ||
Aliases: | None | ||
Description: | ribosomal protein L24 [Source:HGNC Symbol;Acc:10325] |
Percent Identity: | 73.81 % |
Parental protein coverage: | 50.96 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | KFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASK-KTAMA-ATKAPTK-AAP-KQKI |
.FQRAITG.SL.DIMAKRNQK.EV.K.Q.EQ.IRAAKEA..AKQASK.KT..A.A.K.PTK...P.KQKI | |
Retrocopy | QFQRAITGTSLVDIMAKRNQKTEVIKTQ*EQIIRAAKEAR*AKQASK>KTKTAMAAKGPTKEGSP>KQKI |
Parental | VKPVKVSAPRVGGK |
VKP.KVSAP.VGGK | |
Retrocopy | VKPRKVSAP*VGGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 151 .31 RPM |
SRP017611_kidney | 0 .00 RPM | 318 .63 RPM |
SRP017611_liver | 0 .00 RPM | 245 .99 RPM |