RetrogeneDB ID: | retro_cpor_1020 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_4:45054911..45055302(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000019941 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.97 % |
Parental protein coverage: | 91.08 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | RVELCSFSGYKIYPGHG-RRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKK |
.V.LCSFSGYK.Y.GH..R.YART.GKV.QFLNAK..S.FLSKRNP.Q.N....YRRKHKKGQSEEIQKK | |
Retrocopy | KVKLCSFSGYKVYLGHR<RCYARTHGKVSQFLNAKFDSMFLSKRNPQQLNRNIFYRRKHKKGQSEEIQKK |
Parental | RTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKA-KQASKKTAMAAAKAPTKAAPK |
.T..AVKFQR.....SLADI.AK.NQKPEV.KAQR.QA.RA...AK.A.K.ASKK.AM..AKAPTK.... | |
Retrocopy | KTG-AVKFQRT----SLADIIAK*NQKPEVKKAQRQQALRA---AKEA<KKASKKIAMITAKAPTK---- |
Parental | QKIVK |
QKI.K | |
Retrocopy | QKIIK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .23 RPM | 92 .08 RPM |
SRP017611_kidney | 0 .21 RPM | 147 .09 RPM |
SRP017611_liver | 0 .26 RPM | 119 .31 RPM |
SRP040447_lung | 0 .45 RPM | 162 .90 RPM |
SRP040447_skeletal_muscle | 0 .07 RPM | 192 .59 RPM |