RetrogeneDB ID: | retro_ocun_323 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:166903790..166904218(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL24 | ||
Ensembl ID: | ENSOCUG00000000791 | ||
Aliases: | None | ||
Description: | ribosomal protein L24 [Source:HGNC Symbol;Acc:10325] |
Percent Identity: | 64.86 % |
Parental protein coverage: | 91.72 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | CSFSGYKIYPGHGR-RYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKK-RTR |
CSF..YKI.P..G....ART.G.VFQFLNAK.ES.FL.KRN...I...V.YRRK.KKGQSEE.QKK.R.. | |
Retrocopy | CSFNRYKIDPNRGG<HIARTEGSVFQFLNAKYESSFLPKRNLWPISFIVHYRRKDKKGQSEETQKK<RSH |
Parental | RAVKFQRAITGASLADIMA-KRNQKPEVRKAQREQAIR-AAKEAKKAKQASKKTAMAAAKAPTKAAPKQK |
.AVKFQR.I.GASLADI.A.KRN.K..V.K.Q.EQA.R....EAKK.K.A.KKTAMA.AKAPT..APK.K | |
Retrocopy | LAVKFQRTIIGASLADIVA<KRN*KRGVKKVQQEQAVR<GSTEAKKSKKATKKTAMATAKAPTRTAPKKK |
Parental | IVKPVKVS |
IVK..K.S | |
Retrocopy | IVKCLKLS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 45 .86 RPM |
SRP017611_kidney | 0 .00 RPM | 161 .06 RPM |
SRP017611_liver | 0 .00 RPM | 17 .03 RPM |