RetrogeneDB ID: | retro_rnor_1250 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 17:5225109..5225356(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl24 | ||
Ensembl ID: | ENSRNOG00000001611 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L24 [Source:UniProtKB/Swiss-Prot;Acc:P83732] |
Percent Identity: | 66.28 % |
Parental protein coverage: | 53.5 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | RRAVKFQRAITGA-SLADIM-AKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQ |
R..V.FQ..I....S.ADIM.AK.NQK..VRKA..EQA.RA.K..KKAK..SK.TAM.AAKAPT.AA.KQ | |
Retrocopy | RSTVTFQGVIPVC<SRADIM<AKKNQKTGVRKAH*EQARRADKKGKKAKRVSK-TAMVAAKAPTNAANKQ |
Parental | KIVKPVKVSAPRVGGK |
KIV.PVKVSA.RVG.K | |
Retrocopy | KIVNPVKVSALRVGRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .43 RPM | 63 .99 RPM |
SRP017611_kidney | 0 .21 RPM | 73 .97 RPM |
SRP017611_liver | 0 .20 RPM | 62 .33 RPM |