RetrogeneDB - Parental gene ENSDNOG00000003194 details

							
>ENSDNOG00000003194
GCCTCTCTTTCTCTTCGCCATCTTCCTTGTTACCGGGCGTCCGTAACCATGAAGGTCGAGCTCTGCAGTTTCAGCGGGTA

CAAGATCTATCCTGGACATGGGAGGCGCTATGCCAGGACCGACGGGAAGGTTTTCCAGTTTCTTAATGCAAAATGCGAAT

CGGCGTTCCTTTCCAAGAGGAACCCTCGGCAGATAAACTGGACTGTCCTCTACAGAAGAAAGCATAAAAAGGGACAGTCG

GAAGAAATTCAAAAAAAGAGAACTCGCCGCGCAGTCAAATTCCAGAGGGCGATCACTGGTGCATCCCTTGCTGATATTAT

GGCCAAGAGGAATCAGAAACCCGAAGTTAGAAAGGCTCAGCGAGAACAAGCTATAAGGGCTGCCAAAGAAGCAAAAAAGG

CTAAGCAGGCATCTAAAAAGACAGCAATGGCTGCTGCTAAGGCTCCCACAAAGGCAGCACCCAAACAAAAGATTGTGAAG

TCTGTGAAGGTTTCTGCTCCCCGAGTTGGAGGAAAACGCTAA

Library	Parental gene expression (RPM)
SRP012922_ascending_colon	258 .45 RPM
SRP012922_cerebellum	152 .73 RPM
SRP012922_heart	196 .76 RPM
SRP012922_kidney	368 .80 RPM
SRP012922_liver	167 .66 RPM
SRP012922_lung	355 .85 RPM
SRP012922_quadricep_muscle	265 .51 RPM
SRP012922_spleen	383 .67 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000003740	ortholog_one2one	3 retrogenes	retro_amel_1042, retro_amel_1089, retro_amel_201,
Bos taurus	ENSBTAG00000013461	ortholog_one2one	1 retrogene	retro_btau_1143,
Canis familiaris	ENSCAFG00000009601	ortholog_one2one	4 retrogenes	retro_cfam_1908, retro_cfam_615, retro_cfam_862, retro_cfam_989,
Callithrix jacchus	ENSCJAG00000000496	ortholog_one2many	3 retrogenes	retro_cjac_2544, retro_cjac_2941, retro_cjac_327,
Cavia porcellus	ENSCPOG00000019941	ortholog_one2many	5 retrogenes	retro_cpor_1020, retro_cpor_461, retro_cpor_474, retro_cpor_904, retro_cpor_947,
Equus caballus	ENSECAG00000024095	ortholog_one2one	1 retrogene	retro_ecab_205,
Erinaceus europaeus	ENSEEUG00000009320	ortholog_one2one	3 retrogenes	retro_eeur_505, retro_eeur_534, retro_eeur_621,
Felis catus	ENSFCAG00000003327	ortholog_one2many	1 retrogene	retro_fcat_31,
Homo sapiens	ENSG00000114391	ortholog_one2one	8 retrogenes	retro_hsap_1437, retro_hsap_1752, retro_hsap_2418, retro_hsap_2614, retro_hsap_2743, retro_hsap_281, retro_hsap_3583, retro_hsap_4179,
Gorilla gorilla	ENSGGOG00000011609	ortholog_one2one	8 retrogenes	retro_ggor_1106, retro_ggor_1504, retro_ggor_1831, retro_ggor_1909, retro_ggor_2252, retro_ggor_2417, retro_ggor_2803, retro_ggor_324,
Loxodonta africana	ENSLAFG00000013804	ortholog_one2one	3 retrogenes	retro_lafr_181, retro_lafr_452, retro_lafr_612,
Macropus eugenii	ENSMEUG00000009177	ortholog_one2one	7 retrogenes	retro_meug_1769, retro_meug_371, retro_meug_385, retro_meug_449, retro_meug_730, retro_meug_759, retro_meug_963,
Myotis lucifugus	ENSMLUG00000017005	ortholog_one2many	4 retrogenes	retro_mluc_1990, retro_mluc_2185, retro_mluc_35, retro_mluc_393,
Macaca mulatta	ENSMMUG00000015059	ortholog_one2many	9 retrogenes	retro_mmul_1234, retro_mmul_1711, retro_mmul_1803, retro_mmul_2263, retro_mmul_2521, retro_mmul_37, retro_mmul_560, retro_mmul_609, retro_mmul_823,
Monodelphis domestica	ENSMODG00000001916	ortholog_one2one	3 retrogenes	retro_mdom_675, retro_mdom_854, retro_mdom_974,
Mustela putorius furo	ENSMPUG00000011738	ortholog_one2one	3 retrogenes	retro_mputfur_255, retro_mputfur_406, retro_mputfur_914,
Nomascus leucogenys	ENSNLEG00000003276	ortholog_one2one	6 retrogenes	retro_nleu_1413, retro_nleu_1790, retro_nleu_1894, retro_nleu_2031, retro_nleu_2815, retro_nleu_2937,
Oryctolagus cuniculus	ENSOCUG00000000791	ortholog_one2many	8 retrogenes	retro_ocun_1401, retro_ocun_190, retro_ocun_303, retro_ocun_323, retro_ocun_420, retro_ocun_480, retro_ocun_526, retro_ocun_531,
Otolemur garnettii	ENSOGAG00000013843	ortholog_one2one	8 retrogenes	retro_ogar_1592, retro_ogar_1777, retro_ogar_2086, retro_ogar_2785, retro_ogar_2922, retro_ogar_3356, retro_ogar_677, retro_ogar_838,
Ochotona princeps	ENSOPRG00000004255	ortholog_one2one	6 retrogenes	retro_opri_1100, retro_opri_1109, retro_opri_1131, retro_opri_900, retro_opri_918, retro_opri_95,
Procavia capensis	ENSPCAG00000005918	ortholog_one2one	1 retrogene	retro_pcap_192,
Pongo abelii	ENSPPYG00000013588	ortholog_one2one	6 retrogenes	retro_pabe_1191, retro_pabe_1450, retro_pabe_1782, retro_pabe_2277, retro_pabe_2343, retro_pabe_3419,
Pan troglodytes	ENSPTRG00000015176	ortholog_one2many	2 retrogenes	retro_ptro_1214, retro_ptro_85,
Pteropus vampyrus	ENSPVAG00000009889	ortholog_one2one	3 retrogenes	retro_pvam_1317, retro_pvam_743, retro_pvam_831,
Rattus norvegicus	ENSRNOG00000001611	ortholog_one2many	25 retrogenes	retro_rnor_1244, retro_rnor_1245, retro_rnor_1247, retro_rnor_1248, retro_rnor_1250, retro_rnor_1251, retro_rnor_1252, retro_rnor_1253, retro_rnor_1452, retro_rnor_1643, retro_rnor_1699, retro_rnor_1850, retro_rnor_1851, retro_rnor_1985, retro_rnor_2026, retro_rnor_2134, retro_rnor_2148, retro_rnor_2205, retro_rnor_2214, retro_rnor_2294, retro_rnor_2709, retro_rnor_435, retro_rnor_751, retro_rnor_964, retro_rnor_993,
Sorex araneus	ENSSARG00000007615	ortholog_one2one	6 retrogenes	retro_sara_198, retro_sara_204, retro_sara_330, retro_sara_535, retro_sara_574, retro_sara_711,
Sarcophilus harrisii	ENSSHAG00000008226	ortholog_one2one	2 retrogenes	retro_shar_171, retro_shar_264,
Sus scrofa	ENSSSCG00000011952	ortholog_one2one	4 retrogenes	retro_sscr_116, retro_sscr_1218, retro_sscr_669, retro_sscr_932,
Ictidomys tridecemlineatus	ENSSTOG00000014654	ortholog_one2many	2 retrogenes	retro_itri_442, retro_itri_69,
Tupaia belangeri	ENSTBEG00000012044	ortholog_one2one	30 retrogenes	retro_tbel_1349, retro_tbel_1429, retro_tbel_1676, retro_tbel_2076, retro_tbel_2248, retro_tbel_2553, retro_tbel_2836, retro_tbel_2853, retro_tbel_2931, retro_tbel_3363, retro_tbel_3507, retro_tbel_3544, retro_tbel_3552, retro_tbel_3557, retro_tbel_3634, retro_tbel_3636, retro_tbel_3664, retro_tbel_4105, retro_tbel_4114, retro_tbel_4139, retro_tbel_4236, retro_tbel_4237, retro_tbel_431, retro_tbel_4677, retro_tbel_569, retro_tbel_607, retro_tbel_678, retro_tbel_700, retro_tbel_73, retro_tbel_779,
Tarsius syrichta	ENSTSYG00000002314	ortholog_one2one	4 retrogenes	retro_tsyr_266, retro_tsyr_285, retro_tsyr_401, retro_tsyr_460,
Vicugna pacos	ENSVPAG00000012246	ortholog_one2one	3 retrogenes	retro_vpac_49, retro_vpac_520, retro_vpac_597,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_dnov_523	86.49	63.01	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_dnov_657	58.95	51.45	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_dnov_1209	63.21	59.54	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_dnov_1259	86.49	63.01	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_dnov_1449	86.49	63.01	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_dnov_1643	84.03	82.66	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_dnov_2191	81.82	87.86	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_dnov_2407	85.38	74.57	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_dnov_2537	83.44	89.60	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSDNOG00000003194 retrocopies

Parental gene:	RPL24, ENSDNOG00000003194
Aliases:	None
Description:	ribosomal protein L24 [Source:HGNC Symbol;Acc:10325]
Organism:	*Armadillo (Dasypus novemcinctus)*
Coordinates:	GeneScaffold_469:28442..31177(-)

Parental gene:

RPL24, ENSDNOG00000003194