RetrogeneDB ID: | retro_ocun_420 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 10:15416896..15417319(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL24 | ||
Ensembl ID: | ENSOCUG00000000791 | ||
Aliases: | None | ||
Description: | ribosomal protein L24 [Source:HGNC Symbol;Acc:10325] |
Percent Identity: | 55.48 % |
Parental protein coverage: | 91.08 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | YPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRR-KHKKGQSEEIQKK-RTRRAVKFQRA |
Y.GHG..Y.....K..Q..NAKCE....S...........LYRR.K...G...E...K.RT..AV.F.RA | |
Retrocopy | YSGHGNCYTMNNRKICQIFNAKCELGSFSGESLAD-KLAILYRR<KEECG*LKEFERK<RTHFAVTFHRA |
Parental | ITGASLADIMAKRNQKPEVRKAQREQAIRAAKEA-KKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSA |
I.G.SL.DIMA.RNQKPEVRKAQ..QA.RAAKEA.KKA.QAS.KTAMAA..APT.A.P.Q..V.....SA | |
Retrocopy | IIGVSLVDIMATRNQKPEVRKAQQ*QATRAAKEA<KKAMQASQKTAMAAVQAPTEAVPRQMMVESGRASA |
Parental | PRVGGK |
P.VGGK | |
Retrocopy | P*VGGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 45 .86 RPM |
SRP017611_kidney | 0 .00 RPM | 161 .06 RPM |
SRP017611_liver | 0 .00 RPM | 17 .03 RPM |