Parental gene:

ENSCPOG00000019941

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_35:3750690..3754446(-)


>ENSCPOG00000019941
TATAGGGTCGAGCTGTGCAGCTTTAGTGGGTACAAGATCTACCCAGGACACGGGAGGCGCTACGCCCGGACTGACGGGAA
GGTTTTCCAGTTTCTTAATGCAAAATGCGAATCTGCGTTCCTGTCCAAACGAAATCCTCGGCAGATAAATTGGACTGTCC
TCTACAGAAGAAAGCATAAAAAGGGACAGTCGGAAGAAATTCAAAAGAAAAGAACAAGACGAGCAGTCAAATTCCAGAGG
GCCATCACTGGTGCATCTCTTGCTGATATAATGGCTAAGAGAAATCAGAAACCAGAAGTTAGAAAGGCCCAAAGAGAGCA
AGCTATCAGGGCTGCCAAGGAAGCAAAAAAGGCTAAGCAAGCATCTAAAAAGACTGCAATGGCTGCTGCTAAGGCTCCCA
CAAAGGCAGCACCTAAGCAGAAGATTGTGAAGCCTGTGAAAGTTTCTGCTCCTCGAGTTGGTGGGAAACGCTAA

Library Parental gene expression (RPM)
SRP017611_brain 92 .08 RPM
SRP017611_kidney 147 .09 RPM
SRP017611_liver 119 .31 RPM
SRP040447_lung 162 .90 RPM
SRP040447_skeletal_muscle 192 .59 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003740 ortholog_one2one 3 retrogenes
retro_amel_1042, retro_amel_1089, retro_amel_201,
Bos taurus ENSBTAG00000013461 possible_ortholog 1 retrogene
retro_btau_1143,
Canis familiaris ENSCAFG00000009601 ortholog_one2one 4 retrogenes
retro_cfam_1908, retro_cfam_615, retro_cfam_862, retro_cfam_989,
Callithrix jacchus ENSCJAG00000000496 ortholog_one2one 3 retrogenes
retro_cjac_2544, retro_cjac_2941, retro_cjac_327,
Dasypus novemcinctus ENSDNOG00000003194 ortholog_one2many 9 retrogenes
retro_dnov_1209, retro_dnov_1259, retro_dnov_1449, retro_dnov_1643, retro_dnov_2191, retro_dnov_2407, retro_dnov_2537, retro_dnov_523, retro_dnov_657,
Equus caballus ENSECAG00000024095 ortholog_one2one 1 retrogene
retro_ecab_205,
Erinaceus europaeus ENSEEUG00000009320 possible_ortholog 3 retrogenes
retro_eeur_505, retro_eeur_534, retro_eeur_621,
Felis catus ENSFCAG00000003327 ortholog_one2one 1 retrogene
retro_fcat_31,
Homo sapiens ENSG00000114391 possible_ortholog 8 retrogenes
retro_hsap_1437, retro_hsap_1752, retro_hsap_2418, retro_hsap_2614, retro_hsap_2743, retro_hsap_281, retro_hsap_3583, retro_hsap_4179,
Gorilla gorilla ENSGGOG00000011609 possible_ortholog 8 retrogenes
retro_ggor_1106, retro_ggor_1504, retro_ggor_1831, retro_ggor_1909, retro_ggor_2252, retro_ggor_2417, retro_ggor_2803, retro_ggor_324,
Loxodonta africana ENSLAFG00000013804 ortholog_one2one 3 retrogenes
retro_lafr_181, retro_lafr_452, retro_lafr_612,
Macropus eugenii ENSMEUG00000009177 ortholog_one2many 7 retrogenes
retro_meug_1769, retro_meug_371, retro_meug_385, retro_meug_449, retro_meug_730, retro_meug_759, retro_meug_963,
Myotis lucifugus ENSMLUG00000017005 ortholog_one2one 4 retrogenes
retro_mluc_1990, retro_mluc_2185, retro_mluc_35, retro_mluc_393,
Macaca mulatta ENSMMUG00000015059 ortholog_one2one 9 retrogenes
retro_mmul_1234, retro_mmul_1711, retro_mmul_1803, retro_mmul_2263, retro_mmul_2521, retro_mmul_37, retro_mmul_560, retro_mmul_609, retro_mmul_823,
Monodelphis domestica ENSMODG00000001916 ortholog_one2many 3 retrogenes
retro_mdom_675, retro_mdom_854, retro_mdom_974,
Mustela putorius furo ENSMPUG00000011738 ortholog_one2one 3 retrogenes
retro_mputfur_255, retro_mputfur_406, retro_mputfur_914,
Nomascus leucogenys ENSNLEG00000003276 possible_ortholog 6 retrogenes
retro_nleu_1413, retro_nleu_1790, retro_nleu_1894, retro_nleu_2031, retro_nleu_2815, retro_nleu_2937,
Oryctolagus cuniculus ENSOCUG00000000791 possible_ortholog 8 retrogenes
retro_ocun_1401, retro_ocun_190, retro_ocun_303, retro_ocun_323, retro_ocun_420, retro_ocun_480, retro_ocun_526, retro_ocun_531,
Otolemur garnettii ENSOGAG00000013843 ortholog_one2one 8 retrogenes
retro_ogar_1592, retro_ogar_1777, retro_ogar_2086, retro_ogar_2785, retro_ogar_2922, retro_ogar_3356, retro_ogar_677, retro_ogar_838,
Ochotona princeps ENSOPRG00000004255 possible_ortholog 6 retrogenes
retro_opri_1100, retro_opri_1109, retro_opri_1131, retro_opri_900, retro_opri_918, retro_opri_95,
Procavia capensis ENSPCAG00000005918 possible_ortholog 1 retrogene
retro_pcap_192,
Pongo abelii ENSPPYG00000013588 possible_ortholog 6 retrogenes
retro_pabe_1191, retro_pabe_1450, retro_pabe_1782, retro_pabe_2277, retro_pabe_2343, retro_pabe_3419,
Pan troglodytes ENSPTRG00000015176 possible_ortholog 2 retrogenes
retro_ptro_1214, retro_ptro_85,
Pteropus vampyrus ENSPVAG00000009889 possible_ortholog 3 retrogenes
retro_pvam_1317, retro_pvam_743, retro_pvam_831,
Rattus norvegicus ENSRNOG00000001611 possible_ortholog 25 retrogenes
retro_rnor_1244, retro_rnor_1245, retro_rnor_1247, retro_rnor_1248, retro_rnor_1250, retro_rnor_1251, retro_rnor_1252, retro_rnor_1253, retro_rnor_1452, retro_rnor_1643, retro_rnor_1699, retro_rnor_1850, retro_rnor_1851, retro_rnor_1985, retro_rnor_2026, retro_rnor_2134, retro_rnor_2148, retro_rnor_2205, retro_rnor_2214, retro_rnor_2294, retro_rnor_2709, retro_rnor_435, retro_rnor_751, retro_rnor_964, retro_rnor_993,
Sorex araneus ENSSARG00000007615 possible_ortholog 6 retrogenes
retro_sara_198, retro_sara_204, retro_sara_330, retro_sara_535, retro_sara_574, retro_sara_711,
Sarcophilus harrisii ENSSHAG00000008226 ortholog_one2many 2 retrogenes
retro_shar_171, retro_shar_264,
Sus scrofa ENSSSCG00000011952 ortholog_one2one 4 retrogenes
retro_sscr_116, retro_sscr_1218, retro_sscr_669, retro_sscr_932,
Ictidomys tridecemlineatus ENSSTOG00000014654 ortholog_one2one 2 retrogenes
retro_itri_442, retro_itri_69,
Tupaia belangeri ENSTBEG00000012044 possible_ortholog 30 retrogenes
retro_tbel_1349, retro_tbel_1429, retro_tbel_1676, retro_tbel_2076, retro_tbel_2248, retro_tbel_2553, retro_tbel_2836, retro_tbel_2853, retro_tbel_2931, retro_tbel_3363, retro_tbel_3507, retro_tbel_3544, retro_tbel_3552, retro_tbel_3557, retro_tbel_3634, retro_tbel_3636, retro_tbel_3664, retro_tbel_4105, retro_tbel_4114, retro_tbel_4139, retro_tbel_4236, retro_tbel_4237, retro_tbel_431, retro_tbel_4677, retro_tbel_569, retro_tbel_607, retro_tbel_678, retro_tbel_700, retro_tbel_73, retro_tbel_779,
Tarsius syrichta ENSTSYG00000002314 possible_ortholog 4 retrogenes
retro_tsyr_266, retro_tsyr_285, retro_tsyr_401, retro_tsyr_460,
Vicugna pacos ENSVPAG00000012246 possible_ortholog 3 retrogenes
retro_vpac_49, retro_vpac_520, retro_vpac_597,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_461 89.78 86.62
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2. retro_cpor_474 75.16 97.45
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3. retro_cpor_904 60.00 87.90
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4. retro_cpor_947 64.19 92.36
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5. retro_cpor_1020 68.97 91.08
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Download FASTA sequences of all ENSCPOG00000019941 retrocopies