RetrogeneDB ID: | retro_rnor_964 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 13:63825215..63825587(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl24 | ||
Ensembl ID: | ENSRNOG00000001611 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L24 [Source:UniProtKB/Swiss-Prot;Acc:P83732] |
Percent Identity: | 76.98 % |
Parental protein coverage: | 77.71 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | VFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRR-AVKFQRAITGASLADIMAKRNQ |
VFQFL.AKCE..FLS.RNP.QIN.TV.YRR..KKGQ.EEIQKKRTRR.A..F..AITG.SLAD.MAKRNQ | |
Retrocopy | VFQFLIAKCEFTFLSRRNPQQINVTVFYRRNYKKGQLEEIQKKRTRR>AL*FHQAITGVSLADTMAKRNQ |
Parental | KPEVRKAQREQAIRAAK-EAKKAKQASKKTAMAA--AKAPTKAAPKQKIVKPVKVS |
KPEVRKAQ.EQAIRAAK.EAKK.K..SKKTAMAA......TKAAPKQKIVKPVK.S | |
Retrocopy | KPEVRKAQ*EQAIRAAK<EAKKVKLKSKKTAMAAGCCQGFTKAAPKQKIVKPVKDS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 63 .99 RPM |
SRP017611_kidney | 0 .00 RPM | 73 .97 RPM |
SRP017611_liver | 0 .00 RPM | 62 .33 RPM |