RetrogeneDB ID: | retro_eeur_534 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_340732:46590..46848(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL24 | ||
Ensembl ID: | ENSEEUG00000009320 | ||
Aliases: | None | ||
Description: | ribosomal protein L24 [Source:HGNC Symbol;Acc:10325] |
Percent Identity: | 73.26 % |
Parental protein coverage: | 54.78 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | KKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAA |
KKGQ.EEIQKK.TRRAV.FQRA.TGASLADI.AKRNQKPEVR.AQ.EQAIRAAKEAKKA.QAS..TAMA. | |
Retrocopy | KKGQWEEIQKKKTRRAVQFQRALTGASLADITAKRNQKPEVREAQ*EQAIRAAKEAKKAEQASRETAMAV |
Parental | TKAPTKAAPKQKIVKP |
...P.K.....K...P | |
Retrocopy | PRLPQKIVKPVKVSAP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 151 .31 RPM |
SRP017611_kidney | 0 .19 RPM | 318 .63 RPM |
SRP017611_liver | 0 .00 RPM | 245 .99 RPM |