RetrogeneDB ID: | retro_mmul_560 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1:172782138..172782605(-) | ||
Located in intron of: | ENSMMUG00000013962 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.9654 | ||
Ensembl ID: | ENSMMUG00000015059 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L24 [Source:RefSeq peptide;Acc:NP_001252897] |
Percent Identity: | 79.87 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | RVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKR |
.VEL..FS.YK.YPGHGRRYART..KVFQFLNAKCESAF.SK.NP.QIN.TVLYRRKHKKGQ.EEIQK.R | |
Retrocopy | KVEL*GFSQYKVYPGHGRRYARTKRKVFQFLNAKCESAFFSKGNPQQINCTVLYRRKHKKGQLEEIQKER |
Parental | TRRAVKFQRAITGASLADIMAKRNQ-KPEVRKAQREQAIRAAKE-AKKAKQASKKTAMAAAKAPTKAAPK |
TR.AVK.Q.AITGASLADIMAKRNQ..PEVRKAQ.EQ.IRAAKE....AKQ..KKTAMAAAK.PTKAAPK | |
Retrocopy | TRQAVKLQGAITGASLADIMAKRNQ<EPEVRKAQ*EQGIRAAKE>XXXAKQVPKKTAMAAAKVPTKAAPK |
Parental | QKIVKPVKVSAPR-VGGKR |
Q.IVK.VKVS.P..VGGKR | |
Retrocopy | QMIVKTVKVSDPK<VGGKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 14 .45 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 57 .99 RPM |
SRP007412_cerebellum | 0 .00 RPM | 18 .53 RPM |
SRP007412_heart | 0 .00 RPM | 36 .74 RPM |
SRP007412_kidney | 0 .00 RPM | 21 .01 RPM |
SRP007412_liver | 0 .00 RPM | 19 .71 RPM |
SRP007412_testis | 0 .00 RPM | 23 .71 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_281 |
Gorilla gorilla | retro_ggor_324 |