RetrogeneDB ID: | retro_rnor_1851 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 3:173685654..173686122(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000048498 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl24 | ||
Ensembl ID: | ENSRNOG00000001611 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L24 [Source:UniProtKB/Swiss-Prot;Acc:P83732] |
Percent Identity: | 85.53 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MKVELCSFSGYKIYPGHGRRYARTDGK-VFQFLNAKCESAFLSKRNPRQINWTVLYRRKH-KKGQSEEIQ |
MKV.LCSFSGYKIY.GH.R.YARTDGK.VFQFLNAKCESAFLSKRNPRQINWTVLYRRKH..K....... | |
Retrocopy | MKVNLCSFSGYKIYSGHERLYARTDGK<VFQFLNAKCESAFLSKRNPRQINWTVLYRRKH>RKDSRKKFK |
Parental | KKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAP |
.K......KFQRAITGASLADIMAKRNQKPEVRKAQ.EQAIR.AKEAKKAKQASKKTAMAAAKAPTKAAP | |
Retrocopy | RKEPTLQ-KFQRAITGASLADIMAKRNQKPEVRKAQQEQAIRDAKEAKKAKQASKKTAMAAAKAPTKAAP |
Parental | KQKIVKPVKVSAPRVGGKR |
KQKIVKPVKVSAPRVGGKR | |
Retrocopy | KQKIVKPVKVSAPRVGGKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 63 .99 RPM |
SRP017611_kidney | 0 .00 RPM | 73 .97 RPM |
SRP017611_liver | 0 .00 RPM | 62 .33 RPM |