RetrogeneDB ID: | retro_btau_292 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 1:36685628..36685934(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FUNDC2 | ||
Ensembl ID: | ENSBTAG00000016977 | ||
Aliases: | FUNDC2, HCBP6 | ||
Description: | FUN14 domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8MJN0] |
Percent Identity: | 81.73 % |
Parental protein coverage: | 54.74 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EAARVSSRDELAEMAAASQGNFEGKFESLDLAELAKKQPWWRTLFGQESGPSAEKYSVATQLLIGGVTGW |
EAARVSSRDELAEMAAASQGNFEGKFESLDLAELAKKQPWWRTLFGQESGPSAEKYSVATQLLIGGVTGW | |
Retrocopy | EAARVSSRDELAEMAAASQGNFEGKFESLDLAELAKKQPWWRTLFGQESGPSAEKYSVATQLLIGGVTGW |
Parental | CTGFIFQKVGKLAATAVGGGFFLLQLANHTGYIK |
CTGFIFQK...L.......G..LL....H...IK | |
Retrocopy | CTGFIFQKLVSLVTCY--NGWSLLVYIKHSKAIK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 6 .20 RPM |
ERP005899_muscle | 0 .05 RPM | 35 .74 RPM |
SRP017611_brain | 0 .00 RPM | 39 .65 RPM |
SRP017611_kidney | 0 .00 RPM | 40 .54 RPM |
SRP017611_liver | 0 .00 RPM | 14 .20 RPM |
SRP030211_testis | 0 .02 RPM | 72 .73 RPM |