RetrogeneDB ID: | retro_hsap_3530 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 6:146492458..146492980(+) | ||
Located in intron of: | ENSG00000152822 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000187103 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FUNDC2 | ||
Ensembl ID: | ENSG00000165775 | ||
Aliases: | None | ||
Description: | FUN14 domain containing 2 [Source:HGNC Symbol;Acc:24925] |
Percent Identity: | 74.43 % |
Parental protein coverage: | 92.06 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | TARHSAAYRADPLRVSSRDKLTEMAASSQGNFEGNFESLDLAEFAKKQPWWRKLFGQESGPSAEKYSVAT |
TARHSA.Y..DPL.V...D.LTEMA.SSQG.FEGNFESLDLAEFA..QPW..K.FGQESG..A.KY.V.T | |
Retrocopy | TARHSASYSVDPLHVLLGDELTEMAMSSQGHFEGNFESLDLAEFAQNQPWGNKMFGQESGSLAKKYPVTT |
Parental | QLFIGGVTGWCTGFIFQKVG-KLAATAVGG-GFFLLQLANHTGYIKVDWQRVEKDMKKAKEQLKIRKSNQ |
QL.IG..T..C..FIFQKV..KLAATAVGG..FFLLQLA.HT.YIK.DWQ..E.DMKKAKEQLKI.KSNQ | |
Retrocopy | QLLIGSFTR*CMEFIFQKVE<KLAATAVGG>EFFLLQLASHTEYIKDDWQQLEEDMKKAKEQLKIHKSNQ |
Parental | IPTEVRSKAEEVVSFVKKNVLVTGGFFGGFLLGMAS |
IPT.V.SKAEEVVSFVKKNVL.TG..F.G.LLGMAS | |
Retrocopy | IPTKVKSKAEEVVSFVKKNVLMTGEIFRGLLLGMAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 44 .98 RPM |
bodymap2_adrenal | 0 .00 RPM | 85 .17 RPM |
bodymap2_brain | 0 .05 RPM | 43 .53 RPM |
bodymap2_breast | 0 .00 RPM | 63 .89 RPM |
bodymap2_colon | 0 .00 RPM | 87 .75 RPM |
bodymap2_heart | 0 .00 RPM | 123 .45 RPM |
bodymap2_kidney | 0 .00 RPM | 72 .90 RPM |
bodymap2_liver | 0 .00 RPM | 38 .55 RPM |
bodymap2_lung | 0 .00 RPM | 66 .70 RPM |
bodymap2_lymph_node | 0 .00 RPM | 80 .84 RPM |
bodymap2_ovary | 0 .00 RPM | 96 .92 RPM |
bodymap2_prostate | 0 .00 RPM | 78 .20 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 57 .15 RPM |
bodymap2_testis | 0 .00 RPM | 85 .27 RPM |
bodymap2_thyroid | 0 .00 RPM | 99 .22 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 38 .12 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2398 |
Pongo abelii | retro_pabe_2916 |
Callithrix jacchus | retro_cjac_2387 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |