RetrogeneDB ID: | retro_itri_1157 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393388.1:6114336..6114774(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FUNDC2 | ||
Ensembl ID: | ENSSTOG00000007801 | ||
Aliases: | None | ||
Description: | FUN14 domain containing 2 [Source:HGNC Symbol;Acc:24925] |
Percent Identity: | 95.89 % |
Parental protein coverage: | 77.66 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | QGSFEGNFESLDLAEFAKKQPWWRKLFGQESGPSAEKYSVATQLLIGGVTGWCTGFIFQKVGKLAATAVG |
QG.FEGNFESLDLAEFAKKQP.WRKLFGQESGPSAEKYSVATQLLIGGVTGWCTGFIFQKVGKLAAT.VG | |
Retrocopy | QGRFEGNFESLDLAEFAKKQP*WRKLFGQESGPSAEKYSVATQLLIGGVTGWCTGFIFQKVGKLAATTVG |
Parental | GGFFLLQLANHTGYIKVDWQRVEKDMKKAKEQLKIRKSNQIPTEVKSKAEEVVSFVKKNVLVTGGFFGGF |
GGFFLLQLAN.TGYIKVDWQRVEKDMKK.KEQLKIRKSNQIPTEVKSKAEEVVSFVKKNVLVTGGFFGGF | |
Retrocopy | GGFFLLQLANYTGYIKVDWQRVEKDMKKTKEQLKIRKSNQIPTEVKSKAEEVVSFVKKNVLVTGGFFGGF |
Parental | LLGMAS |
.LGMAS | |
Retrocopy | SLGMAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |