RetrogeneDB ID: | retro_itri_1399 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393474.1:3188126..3188690(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000005997 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FUNDC2 | ||
Ensembl ID: | ENSSTOG00000007801 | ||
Aliases: | None | ||
Description: | FUN14 domain containing 2 [Source:HGNC Symbol;Acc:24925] |
Percent Identity: | 97.87 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | METSAPRAGSLLTTPARYSASCRADPLRVASREVLAEMAASSQGSFEGNFESLDLAEFAKKQPWWRKLFG |
METSAPRAGSLLTTPARYSASCRADPLRVASREVL.EMAASS.GSFEGNFESLDL.EFAKKQPWWRKLFG | |
Retrocopy | METSAPRAGSLLTTPARYSASCRADPLRVASREVLTEMAASSKGSFEGNFESLDLEEFAKKQPWWRKLFG |
Parental | QESGPSAEKYSVATQLLIGGVTGWCTGFIFQKVGKLAATAVGGGFFLLQLANHTGYIKVDWQRVEKDMKK |
QESGPSAEK.SVATQLLIGGVTGWCTGFIFQKVGKLAATAVGGGFFLLQLANHTGYIKVDWQRVEKDMKK | |
Retrocopy | QESGPSAEKHSVATQLLIGGVTGWCTGFIFQKVGKLAATAVGGGFFLLQLANHTGYIKVDWQRVEKDMKK |
Parental | AKEQLKIRKSNQIPTEVKSKAEEVVSFVKKNVLVTGGFFGGFLLGMAS |
AKEQLKIRKSNQIPTEVKSKAEEVVSFVKKNVLVTGGFFGGFLLGMAS | |
Retrocopy | AKEQLKIRKSNQIPTEVKSKAEEVVSFVKKNVLVTGGFFGGFLLGMAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |