RetrogeneDB ID:

retro_nleu_1958

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397319.1:11683857..11684425(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:FUNDC2
Ensembl ID:ENSNLEG00000014443
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_1958
ATGGAAACATCTGCCCCACGTGCAGGAAGCCCGGTGGTGGCCACGACAGAGCACCACTCTGCAGCATAACCTCGCAGATC
CCCTGAGTGTGTCCTCGCGAGACTAGCTCACCGAAATGGCCGCGTCCAGTCAAGGAAACTTTGAGGGAAATTTTGAGTCA
GTGGACCTTGCAGAATTTGCTAAGCAGCAGCCATGGTGGCATAAGCTGTTCGGGCCAGAATCTGGACTTTCAGCCGAAAA
GTATAGTGTGGCAACCCAGCTGTTCATTGGAGGTGTCACTGGATGGTGCACGGGTTTCATATTCCAGAAGGTTGGAAAGT
TGGCTGCAACAGCTGTGGGAGGTGGATTTTTTCTCCTTCAGCTTGCAAACCATTCTGGGTACATCAAAGTTGATTGGCAA
CGAGTGGAGAAGGACATGAAGAAAGCCAAAGAGCAGCTGAAGATCCCTAAGAGCAATCAGATACCTACCCAGGTCAGGAA
CAAAGCTGAGGAGGTTGTGTCGTTTGTGAAGAAGAATGTTCTAGTGACTGGGGGATTTTTTGGAGGCTTTCTGCTTGGCA
TGGCATCC

ORF - retro_nleu_1958 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 87.37 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMETSAPRAGSQVVATTARHSAA-YRADPLPVSSRDKLTEWPLRYGRNFEGNFESLDLAEFAKKQPWWRKL
METSAPRAGS.VVATT..HSAA...ADPL.VSSRD.LTE.......NFEGNFES.DLAEFAK.QPWW.KL
RetrocopyMETSAPRAGSPVVATTEHHSAA>NLADPLSVSSRD*LTEMAASSQGNFEGNFESVDLAEFAKQQPWWHKL
ParentalFGQESGPSAEKYSVATQLFIGGVTGWCTGFIFQKVGKLAATAVGGGFFLLQLANHTGYIKVDWQRVEKDM
FG.ESG.SAEKYSVATQLFIGGVTGWCTGFIFQKVGKLAATAVGGGFFLLQLANH.GYIKVDWQRVEKDM
RetrocopyFGPESGLSAEKYSVATQLFIGGVTGWCTGFIFQKVGKLAATAVGGGFFLLQLANHSGYIKVDWQRVEKDM
ParentalKKAKEQLKIRKSNQIPTEVRSKAEEVVSFVKKNVLVTGGFFGGFLLGMAS
KKAKEQLKI.KSNQIPT.VR.KAEEVVSFVKKNVLVTGGFFGGFLLGMAS
RetrocopyKKAKEQLKIPKSNQIPTQVRNKAEEVVSFVKKNVLVTGGFFGGFLLGMAS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_1958 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 20 parental genes, and 51 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000169771 retrocopy
Choloepus hoffmanni ENSCHOG0000000430611 retrocopies
Callithrix jacchus ENSCJAG000000042873 retrocopies
Dipodomys ordii ENSDORG000000131561 retrocopy
Echinops telfairi ENSETEG000000138172 retrocopies
Homo sapiens ENSG000001657753 retrocopies
Loxodonta africana ENSLAFG000000152891 retrocopy
Myotis lucifugus ENSMLUG000000077761 retrocopy
Macaca mulatta ENSMMUG000000102481 retrocopy
Monodelphis domestica ENSMODG000000164841 retrocopy
Mus musculus ENSMUSG000000311982 retrocopies
Nomascus leucogenys ENSNLEG000000025132 retrocopies
Nomascus leucogenys ENSNLEG00000014443 5 retrocopies
Otolemur garnettii ENSOGAG000000334613 retrocopies
Pongo abelii ENSPPYG000000208974 retrocopies
Pan troglodytes ENSPTRG000000418524 retrocopies
Pteropus vampyrus ENSPVAG000000135521 retrocopy
Rattus norvegicus ENSRNOG000000240662 retrocopies
Sus scrofa ENSSSCG000000128171 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000078012 retrocopies



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