RetrogeneDB ID: | retro_rnor_2870 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:132211329..132211609(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Fundc2 | ||
Ensembl ID: | ENSRNOG00000024066 | ||
Aliases: | Fundc2, RGD1560916 | ||
Description: | FUN14 domain-containing protein 2 [Source:RefSeq peptide;Acc:NP_001129229] |
Percent Identity: | 55.67 % |
Parental protein coverage: | 62.91 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | YSAATQLAVGGVTGWCTGLVFRKVGKLAATALGGGFFLLQLASHTGYIRVDWQR-LEKDVK-KAKAQLKI |
YS...QL....VTG.C....FRKVG.LAATAL...F.L.QLA.HTGYI..D.....EK..K.KAK.QLK. | |
Retrocopy | YSVVVQL*SRSVTG*CA-FIFRKVGALAATALRCRFVLFQLANHTGYIKADCDQ<IEKEKK<KAKDQLKT |
Parental | HRGRQMPTEVGSKAEEALSFVKKNVPV |
....Q..TE...KAEE..SFVKKNV.V | |
Retrocopy | CKNDQTLTELKIKAEEVVSFVKKNVLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 13 .88 RPM |
SRP017611_kidney | 0 .00 RPM | 12 .42 RPM |
SRP017611_liver | 0 .00 RPM | 3 .83 RPM |