RetrogeneDB ID:

retro_dord_597

Retrocopy
location
Organism:Kangaroo rat (Dipodomys ordii)
Coordinates:scaffold_3823:19915..20329(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:Fundc2
Ensembl ID:ENSDORG00000013156
Aliases:None
Description:FUN14 domain containing 2 [Source:MGI Symbol;Acc:MGI:1914641]


Retrocopy-Parental alignment summary:






>retro_dord_597
TATGAACTGCTGGATTTGACGGAGTGTGTGCAAAGGCGCAGCTGGTGGAATCGAGTGTTTGGCCACCGTTCAGGACCAAT
GGTAGACAAATACTCAGTGGCCACTAGGATTGTCCTGGGTGGTGTGACAGGCTGGTGTGCAGGATTTTTATTCCAGAAGG
CTGGAAAGCTTGCAGCCACCGCAGTGGGTGGTGGCTTTCTTCTCCTTCAGATCGCCAGCCACAGTGGCTATGTGCAGATC
GACTGGAACAGAGTTGCCAAGGATGTCAACAAGGCGAGAAGGCAGATGAAGAAGCGAGCAAATAAGGCAGCACCGGACGT
CAACAATATAATTGGAGAAGCAACAGAGTTCATTAAACAGAATATGGTGGTGTCCACTGGATTTGTGGGAGGATTTTTTA
TAGGCCTTGCGTCA

ORF - retro_dord_597 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 54.68 %
Parental protein coverage: 72.77 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalFESLDLAEFARKQPWWRKLFGQDSGPSVEKYSVATQLLIGGVTGWCTGFIFQKVGKLAATAVGGGFFLLQ
.E.LDL.E......WW...FG..SGP.V.KYSVAT....GGVTGWC.GF.FQK.GKLAATAVGGGF.LLQ
RetrocopyYELLDLTECVQRRSWWNRVFGHRSGPMVDKYSVATRIVLGGVTGWCAGFLFQKAGKLAATAVGGGFLLLQ
ParentalIANHTGYIKVDWQRVEKDMKKAKEQLKIRKSNQIPTEVKSKAEEVVSFVKKNVLVTGGFLGGFLLGMAS
IA.H.GY...DW.RV.KD..KA..Q.K....N.....V.....E...F.K.N..V..GF.GGF..G.AS
RetrocopyIASHSGYVQIDWNRVAKDVNKARRQMK-KRANKAAPDVNNIIGEATEFIKQNMVVSTGFVGGFFIGLAS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Dipodomys ordii was not studied using RNA-Seq expression data.
Dipodomys ordii was not studied using ChIP-Seq data.
Dipodomys ordii was not studied using EST data.
Dipodomys ordii was not studied using FANTOM5 data.
retro_dord_597 was not experimentally validated.

Retrocopy orthology:
Dipodomys ordii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 19 parental genes, and 49 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000169771 retrocopy
Choloepus hoffmanni ENSCHOG0000000430611 retrocopies
Callithrix jacchus ENSCJAG000000042873 retrocopies
Dipodomys ordii ENSDORG00000013156 1 retrocopy
retro_dord_597 ,
Echinops telfairi ENSETEG000000138172 retrocopies
Homo sapiens ENSG000001657753 retrocopies
Loxodonta africana ENSLAFG000000152891 retrocopy
Myotis lucifugus ENSMLUG000000077761 retrocopy
Macaca mulatta ENSMMUG000000102481 retrocopy
Monodelphis domestica ENSMODG000000164841 retrocopy
Mus musculus ENSMUSG000000311982 retrocopies
Nomascus leucogenys ENSNLEG000000144435 retrocopies
Otolemur garnettii ENSOGAG000000334613 retrocopies
Pongo abelii ENSPPYG000000208974 retrocopies
Pan troglodytes ENSPTRG000000418524 retrocopies
Pteropus vampyrus ENSPVAG000000135521 retrocopy
Rattus norvegicus ENSRNOG000000240662 retrocopies
Sus scrofa ENSSSCG000000128171 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000078012 retrocopies



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