RetrogeneDB ID: | retro_mmul_78 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 13:84800618..84801074(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000015318 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Q7YRC0 | ||
Ensembl ID: | ENSMMUG00000010248 | ||
Aliases: | FUNDC2, HCBP6 | ||
Description: | None |
Percent Identity: | 90.55 % |
Parental protein coverage: | 76.97 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAASTQGNFDGNFESLDLAEFAKKQPWWRKLFGQESGPSAEKYSVATQLFIGGVTGWCTGFIFQKVGKLA |
MAAS..GNF.G..ES.DLAEFAK.QPWWRKLFG.E.G.SAEKYSVATQLFIGGVTGWCTGFIFQKVGKLA | |
Retrocopy | MAASSEGNFEGDIESVDLAEFAKQQPWWRKLFGPECGLSAEKYSVATQLFIGGVTGWCTGFIFQKVGKLA |
Parental | ATAVGGGFFLLQLANHTGYIKVDWQRVEKDMKKAKEQLKIRKSNQMPTEVRSKAEEV |
ATAVGGGFFLLQLANH.GYIKVDWQRVEKDMKKAKEQLKIRKSNQ.PTEVRSKAEEV | |
Retrocopy | ATAVGGGFFLLQLANHSGYIKVDWQRVEKDMKKAKEQLKIRKSNQIPTEVRSKAEEV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 3 .81 RPM | 12 .10 RPM |
SRP007412_brain_prefrontal_cortex | 1 .82 RPM | 12 .69 RPM |
SRP007412_cerebellum | 3 .75 RPM | 13 .50 RPM |
SRP007412_heart | 6 .12 RPM | 16 .72 RPM |
SRP007412_kidney | 3 .17 RPM | 10 .56 RPM |
SRP007412_liver | 0 .36 RPM | 1 .62 RPM |
SRP007412_testis | 222 .84 RPM | 27 .10 RPM |