RetrogeneDB ID: | retro_hsap_2560 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 22:39551540..39551883(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000227009 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FUNDC2 | ||
Ensembl ID: | ENSG00000165775 | ||
Aliases: | None | ||
Description: | FUN14 domain containing 2 [Source:HGNC Symbol;Acc:24925] |
Percent Identity: | 76.92 % |
Parental protein coverage: | 60.32 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | SAPRAGSQ-VVATTAR-HSAAYRADPLRVSSRDKLTEMAASSQGNFEGNFESLDLAEFAKKQPWWRKLFG |
S.PRAGSQ.VV.T....HSA.Y.ADPLRVSS.DKL.EMA.SSQ.NFEGNFESLDL.EFAKKQPWW.KLF. | |
Retrocopy | SVPRAGSQPVVMTLCA<HSASYSADPLRVSSQDKLDEMAESSQANFEGNFESLDLVEFAKKQPWWCKLFR |
Parental | QESGPS-AEKYSVATQLFIGGVTGWCTGFIFQKVGKLAATAVGGGFF |
QESGPS..EK..VATQ.FIGGVT.WCTGFI.QKVGKLA.T.VGG..F | |
Retrocopy | QESGPS<PEK*RVATQPFIGGVTEWCTGFISQKVGKLAVTVVGGVLF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 44 .98 RPM |
bodymap2_adrenal | 0 .04 RPM | 85 .17 RPM |
bodymap2_brain | 0 .00 RPM | 43 .53 RPM |
bodymap2_breast | 0 .00 RPM | 63 .89 RPM |
bodymap2_colon | 0 .04 RPM | 87 .75 RPM |
bodymap2_heart | 0 .00 RPM | 123 .45 RPM |
bodymap2_kidney | 0 .00 RPM | 72 .90 RPM |
bodymap2_liver | 0 .00 RPM | 38 .55 RPM |
bodymap2_lung | 0 .00 RPM | 66 .70 RPM |
bodymap2_lymph_node | 0 .00 RPM | 80 .84 RPM |
bodymap2_ovary | 0 .00 RPM | 96 .92 RPM |
bodymap2_prostate | 0 .00 RPM | 78 .20 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 57 .15 RPM |
bodymap2_testis | 0 .19 RPM | 85 .27 RPM |
bodymap2_thyroid | 0 .00 RPM | 99 .22 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 38 .12 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1490 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .03 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .04 RPM |
CEU_NA12400 | 0 .11 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .05 RPM |
CEU_NA12873 | 0 .03 RPM |
FIN_HG00183 | 0 .03 RPM |
FIN_HG00277 | 0 .07 RPM |
FIN_HG00315 | 0 .08 RPM |
FIN_HG00321 | 0 .03 RPM |
FIN_HG00328 | 0 .02 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .05 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .03 RPM |
GBR_HG00111 | 0 .04 RPM |
GBR_HG00114 | 0 .03 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .06 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .02 RPM |
GBR_HG00137 | 0 .05 RPM |
GBR_HG00142 | 0 .06 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .02 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .03 RPM |
TSI_NA20765 | 0 .06 RPM |
TSI_NA20771 | 0 .03 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .03 RPM |
YRI_NA18916 | 0 .04 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .03 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .02 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .02 RPM |