RetrogeneDB ID: | retro_rnor_1648 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 2:147381133..147381547(-) | ||
Located in intron of: | ENSRNOG00000012729 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Fundc2 | ||
Ensembl ID: | ENSRNOG00000024066 | ||
Aliases: | Fundc2, RGD1560916 | ||
Description: | FUN14 domain-containing protein 2 [Source:RefSeq peptide;Acc:NP_001129229] |
Percent Identity: | 73.19 % |
Parental protein coverage: | 91.39 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EALDLAEFTRRQPWWRKLFGPESGPSAEKYSAATQLAVGGVTGWCTGLVFRKVGKLAATALGGGFFLLQL |
EALDL.EF...QPWWRKLFG.ES..S.EKYS.ATQL..GGVTGWCTG..F.KVGKLAATA.GGGFFLLQL | |
Retrocopy | EALDLTEFGKNQPWWRKLFGHESRSSGEKYSVATQLLIGGVTGWCTGFIFQKVGKLAATAVGGGFFLLQL |
Parental | ASHTGYIRVDWQRLEKDVKKAKAQLKIHRGRQMPTEVGSKAEEALSFVKKNVPVAAGFLGGFLLGLAS |
A.HTGY..VDW.R.EKD.KKAK.QL.I....Q.PTEV.SKAEE...FVKKNV.V..GF.GGFLLG.AS | |
Retrocopy | ANHTGYVKVDWTRVEKDMKKAKEQLTIRKSAQIPTEVKSKAEEVVCFVKKNVLVTGGFFGGFLLGMAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 13 .88 RPM |
SRP017611_kidney | 0 .00 RPM | 12 .42 RPM |
SRP017611_liver | 0 .00 RPM | 3 .83 RPM |
Species | RetrogeneDB ID |
---|---|
Mus musculus | retro_mmus_2242 |