RetrogeneDB ID: | retro_cfam_1162 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 25:13761937..13762284(+) | ||
Located in intron of: | ENSCAFG00000007007 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000013934 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.29 % |
Parental protein coverage: | 87.97 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | GQETVAQIKAHVASLEGIAPEDQVLLLAGSPLEDEATL-GQCGVEALTTLEVAGRMLGGKVHGSLARAGK |
G.....Q.KAHVASLEGI..EDQVLLLAGSPLEDEATL..QCGVEALTTLEVAG.MLGG.VHGSLARAGK | |
Retrocopy | GDSRPDQGKAHVASLEGITLEDQVLLLAGSPLEDEATL<SQCGVEALTTLEVAGHMLGGEVHGSLARAGK |
Parental | VRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS |
VRGQTPKVAKQEKKKK.TGRAK..MQYNRRFVNVVPTFGKKKGPNANS | |
Retrocopy | VRGQTPKVAKQEKKKK-TGRAKQQMQYNRRFVNVVPTFGKKKGPNANS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 242 .17 RPM |
SRP017611_brain | 0 .08 RPM | 96 .14 RPM |
SRP017611_kidney | 0 .40 RPM | 640 .43 RPM |
SRP017611_liver | 0 .29 RPM | 179 .62 RPM |