RetrogeneDB ID:

retro_ogar_146

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873527.1:32906847..32907234(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000029722
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000015013
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_146
AAGCAGCTCTTCATCAGCGCCCAGGAGCTACACCCTCGAGGTGACCAGCCAGGAGACGGTCGCCCAGATAAAGCCTCACT
GGAGGGCATTGCCCCAGATGATCAAGTCATGCTCCTGGCAGGCACGACCCTAGAAGATGACGCTATCCTGGGCCAGTGTG
GGGTGGAGGCCCTGACAACTCTGGAAGTAGCCGGCCGCGTGCTTGGAGGTATTGGTTCCCCGGCCCATGCAGGGAAAGTG
AGAGGTCAGAGTCCCAAGGCGGCCAAACAGGTGGAGAAGAAGAAGAAGAAGACCGGCCGGGCCAAGCGGCAGATGCAGTA
CCATCAGCGCTTTGTCAATGTTGTGCCCACCTTTGGCAAGAAGAAGGGCCACAATGCCAACTCTTAA

ORF - retro_ogar_146 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 83.96 %
Parental protein coverage: 78.95 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalASLEGIAPEDQVVLLAGTPLEDEAILGQCGVEALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQ-E
ASLEGIAP.DQV.LLAGT.LED.AILGQCGVEALTTLEVAGR.LGG...GS.A.AGKVRGQ.PK.AKQ.E
RetrocopyASLEGIAPDDQVMLLAGTTLEDDAILGQCGVEALTTLEVAGRVLGG--IGSPAHAGKVRGQSPKAAKQVE
ParentalKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS
KKKKKTGRAKR.MQY..RFVNVVPTFGKKKG.NANS
RetrocopyKKKKKTGRAKRQMQYHQRFVNVVPTFGKKKGHNANS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_146 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 30 parental genes, and 102 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000176768 retrocopies
Bos taurus ENSBTAG000000208071 retrocopy
Canis familiaris ENSCAFG000000139347 retrocopies
Callithrix jacchus ENSCJAG000000024321 retrocopy
Dasypus novemcinctus ENSDNOG000000044815 retrocopies
Dipodomys ordii ENSDORG000000036162 retrocopies
Equus caballus ENSECAG000000219562 retrocopies
Echinops telfairi ENSETEG000000105681 retrocopy
Felis catus ENSFCAG000000243679 retrocopies
Homo sapiens ENSG000001498062 retrocopies
Gorilla gorilla ENSGGOG000000027141 retrocopy
Loxodonta africana ENSLAFG000000016891 retrocopy
Microcebus murinus ENSMICG000000165962 retrocopies
Myotis lucifugus ENSMLUG000000153703 retrocopies
Macaca mulatta ENSMMUG000000187761 retrocopy
Monodelphis domestica ENSMODG000000100951 retrocopy
Mustela putorius furoENSMPUG000000122371 retrocopy
Mus musculus ENSMUSG000000382741 retrocopy
Oryctolagus cuniculus ENSOCUG000000148783 retrocopies
Otolemur garnettii ENSOGAG00000015013 4 retrocopies
Pongo abelii ENSPPYG000000030772 retrocopies
Pan troglodytes ENSPTRG000000038663 retrocopies
Rattus norvegicus ENSRNOG000000209823 retrocopies
Sarcophilus harrisii ENSSHAG000000001311 retrocopy
Sus scrofa ENSSSCG000000130022 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000033361 retrocopy
Tupaia belangeri ENSTBEG0000000749211 retrocopies
Tarsius syrichta ENSTSYG0000001466716 retrocopies
Tursiops truncatus ENSTTRG000000172466 retrocopies
Vicugna pacos ENSVPAG000000052051 retrocopy



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