RetrogeneDB ID: | retro_rnor_315 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 6:96410684..96411086(+) | ||
Located in intron of: | ENSRNOG00000023093 | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000046393 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Fau | ||
Ensembl ID: | ENSRNOG00000020982 | ||
Aliases: | None | ||
Description: | Ubiquitin-like protein FUBI [Source:UniProtKB/Swiss-Prot;Acc:Q05474] |
Percent Identity: | 100. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MQLFVRAQELHTLEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGSPLEDEATLGQCGVEALTTLEVAGR |
MQLFVRAQELHTLEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGSPLEDEATLGQCGVEALTTLEVAGR | |
Retrocopy | MQLFVRAQELHTLEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGSPLEDEATLGQCGVEALTTLEVAGR |
Parental | MLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS |
MLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS | |
Retrocopy | MLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 91 .38 RPM |
SRP017611_kidney | 0 .00 RPM | 132 .52 RPM |
SRP017611_liver | 0 .00 RPM | 84 .18 RPM |