RetrogeneDB ID: | retro_cfam_971 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 20:52866022..52866418(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000013934 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.98 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MQLFVRAQELHTLEVTGQETVAQIKAHVASLEGIAPEDQVLLLAGSPLEDEATLGQCGVEALTTLEVAGR |
MQLFVRAQELHTLEVTGQ..VAQIKAHVASLEGIA.EDQVLLLAGSPLEDEATLGQCGVEALTTLEVA.R | |
Retrocopy | MQLFVRAQELHTLEVTGQ*MVAQIKAHVASLEGIALEDQVLLLAGSPLEDEATLGQCGVEALTTLEVASR |
Parental | MLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS |
MLGGKVHGSLA.AGKVRGQTPKVA.QE.KKKKTGRAKR.MQYNRRFVNVVPTFGKKKGPNANS | |
Retrocopy | MLGGKVHGSLACAGKVRGQTPKVAEQE-KKKKTGRAKRQMQYNRRFVNVVPTFGKKKGPNANS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 2 .23 RPM | 242 .17 RPM |
SRP017611_brain | 1 .19 RPM | 96 .14 RPM |
SRP017611_kidney | 17 .17 RPM | 640 .43 RPM |
SRP017611_liver | 3 .55 RPM | 179 .62 RPM |