RetrogeneDB ID: | retro_mmul_1453 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 2:105472416..105472695(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAU | ||
Ensembl ID: | ENSMMUG00000018776 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S30 [Source:RefSeq peptide;Acc:NP_001181567] |
Percent Identity: | 73.12 % |
Parental protein coverage: | 69.92 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | QLFVRAQELHTLEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGTPLEDEATLGQCGVEALTTLEVAGRM |
QLFVRAQELH.LEVTG...VAQIK.HVASL.G.A.EDQ.VLLAGTPLEDE.TLG..G.EAL.T.EV...M | |
Retrocopy | QLFVRAQELHILEVTG*GAVAQIKVHVASLKGTASEDQPVLLAGTPLEDETTLGKYGMEALITVEVVHCM |
Parental | LGGKVHGSLARAGKVRGQTPKVA |
L.GKVH.SLA..GK..GQT.KVA | |
Retrocopy | LRGKVHVSLAHSGKLKGQTLKVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 44 .48 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 101 .94 RPM |
SRP007412_cerebellum | 0 .00 RPM | 47 .66 RPM |
SRP007412_heart | 0 .00 RPM | 81 .09 RPM |
SRP007412_kidney | 0 .00 RPM | 65 .02 RPM |
SRP007412_liver | 0 .00 RPM | 147 .61 RPM |
SRP007412_testis | 0 .04 RPM | 106 .79 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2892 |
Pan troglodytes | retro_ptro_1955 |
Pongo abelii | retro_pabe_2393 |