RetrogeneDB ID: | retro_fcat_1163 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:20564698..20565034(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000024367 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.96 % |
Parental protein coverage: | 84.96 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MQLFVRAQELHTLEVTGQETVAQIKAHVASLEGIAPEDQVV-LLAGTPLEDEATLGQCGVEALTTLEVAG |
MQLFVRAQELHTL.VTGQETVAQIKAHVASLEGI.PEDQVV.LLAGTPLEDEAT.GQCG.EALTTLEVA. | |
Retrocopy | MQLFVRAQELHTLKVTGQETVAQIKAHVASLEGITPEDQVV>LLAGTPLEDEATRGQCGAEALTTLEVAA |
Parental | RMLGGK-VHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYN |
..L.GK.V.GSLA.A.KVRGQTPKVAKQEKKKKKTGRAK..MQYN | |
Retrocopy | -CLDGK<VRGSLAHAWKVRGQTPKVAKQEKKKKKTGRAKWWMQYN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 50 .61 RPM |
SRP017611_kidney | 0 .31 RPM | 156 .75 RPM |
SRP017611_liver | 0 .00 RPM | 85 .02 RPM |