RetrogeneDB ID: | retro_ecab_951 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 7:28075078..28075439(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSECAG00000016093 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAU | ||
Ensembl ID: | ENSECAG00000021956 | ||
Aliases: | None | ||
Description: | ubiquitin-like protein fubi and ribosomal protein S30 [Source:RefSeq peptide;Acc:NP_001157337] |
Percent Identity: | 71.21 % |
Parental protein coverage: | 92.2 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | QELHTL-EVTGQETVAQIKAYVASLEGIAAEDQVVLL-AGTPLEDEATLGQCGVEALTTLEVAGRMLGGK |
Q.L.TL..VT.QETVAQIKA.VASL.G.A.ED.VVLL.AG.P.EDEATLG......LTTLEVAG.MLGG. | |
Retrocopy | QKLPTL<QVTSQETVAQIKAPVASLVGLAPEDEVVLL<AGWPPEDEATLG----QRLTTLEVAGCMLGGE |
Parental | VHGSLARAGKVRGQTPKVSESVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS |
V.GSLA.AG.VRGQTP.....VAKQE.KKK.TG.A.RRM.YN.RFV.VVP.FGKK.GPNANS | |
Retrocopy | VTGSLACAGQVRGQTP----DVAKQETKKK-TGGATRRMWYNQRFVSVVPAFGKKTGPNANS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 466 .93 RPM |
SRP021940_cerebellum | 0 .10 RPM | 250 .31 RPM |
SRP021940_embryo | 0 .15 RPM | 336 .28 RPM |
SRP021940_placental_villous | 0 .00 RPM | 203 .13 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 271 .78 RPM |
SRP021940_testis | 0 .06 RPM | 213 .76 RPM |