RetrogeneDB ID: | retro_dnov_1406 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_197447:8..366(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000004481 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.24 % |
Parental protein coverage: | 90.98 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MQLFVRAQELHTLEVTGQETVAQIKAYVASREGIAPEDQVVLLAGTPLEDEATLGQCGVEALTTLEVAGR |
.Q.FV.AQELHTLEVTGQETV.Q.KA.V.SREGIA.EDQVVLL.G..L..EATLGQCG.EALTTLEVA.. | |
Retrocopy | VQVFVCAQELHTLEVTGQETVTQNKACVVSREGIALEDQVVLLVGMHLDNEATLGQCGAEALTTLEVARH |
Parental | MLGGKVHGSLARAGKVRGQ-TPKVAKQEKKKKKTGRAKRRMQYNRR-FVNVVP |
MLGGKVHGSLARA.KVRGQ..P.VAKQE..KKK.G.AKR.MQYNR..FVNV.P | |
Retrocopy | MLGGKVHGSLARAVKVRGQ<APMVAKQE-NKKKAGQAKRQMQYNRH<FVNVCP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 470 .42 RPM |
SRP012922_cerebellum | 0 .41 RPM | 510 .15 RPM |
SRP012922_heart | 0 .00 RPM | 365 .68 RPM |
SRP012922_kidney | 0 .00 RPM | 655 .47 RPM |
SRP012922_liver | 0 .00 RPM | 270 .14 RPM |
SRP012922_lung | 0 .46 RPM | 1025 .85 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 430 .29 RPM |
SRP012922_spleen | 0 .00 RPM | 1168 .42 RPM |