RetrogeneDB ID:

retro_fcat_366

Retrocopy
location
Organism:Cat (Felis catus)
Coordinates:A2:12294204..12294519(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSFCAG00000024367
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_fcat_366
ATGCAGGTTTCTGTCCGCATCCAGGAGCTACACACCCTCGAGGTGGCCATCCGGGAGCCGGTTGCCCACATCAAGGCTCA
CGGAGCCTCACTGGAGGGCGTCGCCCCAGAAGATCAAGTCGGATTCCTGGCAGGTACGCCCCCTAGAGGATGAGGCCACC
CAGGGTCAGTGTGGAGCCGGGGCTCTGACCCCTGGAAGGAGGTTGGGAAAGTCCGTGGTTTCCTGGCCCGTGCTGGGAAA
GTAAGAGGGCGGACTCCCAAGGTGGCCAAAAAGGAGAAAACGAAGATGGGCCGAGTCAAGCAGGGGACACAGTAC

ORF - retro_fcat_366 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 61.4 %
Parental protein coverage: 84.21 %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMQLFVRAQELHTLEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGT-PLEDEATLGQCGVEALTTLEVAG
MQ..VR.QELHTLEV...E.VA.IKAH.ASLEG.APEDQV..LAGT.PLEDEAT.GQCG..ALT.....G
RetrocopyMQVSVRIQELHTLEVAIREPVAHIKAHGASLEGVAPEDQVGFLAGT>PLEDEATQGQCGAGALT----PG
ParentalRMLGGKVHGSLARAGKVRGQTP-KVAKQEKKKKKTGRAKRRMQY
R.LG..V..S....GK..G..P.KVAK..K.K.K.GR.K...QY
RetrocopyRRLGKSV-VSWPVLGK*EGGLP<KVAK--KEKTKMGRVKQGTQY

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP017611_brain 0 .00 RPM 50 .61 RPM
SRP017611_kidney 0 .00 RPM 156 .75 RPM
SRP017611_liver 0 .00 RPM 85 .02 RPM
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_366 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_366 was not experimentally validated.

Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 30 parental genes, and 102 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000176768 retrocopies
Bos taurus ENSBTAG000000208071 retrocopy
Canis familiaris ENSCAFG000000139347 retrocopies
Callithrix jacchus ENSCJAG000000024321 retrocopy
Dasypus novemcinctus ENSDNOG000000044815 retrocopies
Dipodomys ordii ENSDORG000000036162 retrocopies
Equus caballus ENSECAG000000219562 retrocopies
Echinops telfairi ENSETEG000000105681 retrocopy
Felis catus ENSFCAG00000024367 9 retrocopies
Homo sapiens ENSG000001498062 retrocopies
Gorilla gorilla ENSGGOG000000027141 retrocopy
Loxodonta africana ENSLAFG000000016891 retrocopy
Microcebus murinus ENSMICG000000165962 retrocopies
Myotis lucifugus ENSMLUG000000153703 retrocopies
Macaca mulatta ENSMMUG000000187761 retrocopy
Monodelphis domestica ENSMODG000000100951 retrocopy
Mustela putorius furoENSMPUG000000122371 retrocopy
Mus musculus ENSMUSG000000382741 retrocopy
Oryctolagus cuniculus ENSOCUG000000148783 retrocopies
Otolemur garnettii ENSOGAG000000150134 retrocopies
Pongo abelii ENSPPYG000000030772 retrocopies
Pan troglodytes ENSPTRG000000038663 retrocopies
Rattus norvegicus ENSRNOG000000209823 retrocopies
Sarcophilus harrisii ENSSHAG000000001311 retrocopy
Sus scrofa ENSSSCG000000130022 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000033361 retrocopy
Tupaia belangeri ENSTBEG0000000749211 retrocopies
Tarsius syrichta ENSTSYG0000001466716 retrocopies
Tursiops truncatus ENSTTRG000000172466 retrocopies
Vicugna pacos ENSVPAG000000052051 retrocopy



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