RetrogeneDB ID: | retro_cfam_2190 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | X:85606367..85606674(-) | ||
Located in intron of: | ENSCAFG00000018215 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000013934 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.96 % |
Parental protein coverage: | 77.44 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | LEGIAPEDQVLLLAGS-PLEDEATLGQCGVEALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKK |
LE.I.PEDQVL.L.G..PLEDEA.LGQCGVEAL.TLEVAGR.LGG.VHGSLA..GKVR.QTPKVAK...K | |
Retrocopy | LEDISPEDQVLILTGI>PLEDEAILGQCGVEALITLEVAGRILGGEVHGSLAHVGKVRRQTPKVAK-*GK |
Parental | KKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS |
.KKT..AKRR.Q.N..FVNVVPTFGKKKG..ANS | |
Retrocopy | QKKTS*AKRRLQCNWHFVNVVPTFGKKKGLHANS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 242 .17 RPM |
SRP017611_brain | 0 .00 RPM | 96 .14 RPM |
SRP017611_kidney | 0 .00 RPM | 640 .43 RPM |
SRP017611_liver | 0 .00 RPM | 179 .62 RPM |