RetrogeneDB ID: | retro_cfam_1307 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 29:19802727..19803111(-) | ||
Located in intron of: | ENSCAFG00000025085 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COX5B | ||
Ensembl ID: | ENSCAFG00000002387 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris cytochrome c oxidase polypeptide Vb (COX5B), nuclear gene encoding mitochondrial protein, mRNA. [Source:RefSeq mRNA;Acc:NM_001144130] |
Percent Identity: | 65.12 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | MASRLLRGVGALAAQALRARGPNGVAAVRSMASGGGVPTDDEQATGLEREVMMAARKGLDPYNILAPKAA |
MASRLL..VG.LA..ALRA.GPN.V..V..MASGGGVPTDDE...GLER.V.MAA.KGLDPYN...PKA. | |
Retrocopy | MASRLLCRVGVLATGALRASGPNAVPVVHPMASGGGVPTDDE*VNGLERKVTMAAQKGLDPYNMVVPKAV |
Parental | AGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTHYKLVPHQLAH |
.GTKE.PNLVPSIT.K...G.......S...W.WLHK.E...CPSCGTHYKL.P.QLA. | |
Retrocopy | SGTKEVPNLVPSIT-KSNSGQLL*RGDSAITWSWLHKSET*QCPSCGTHYKLMPCQLAN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 115 .71 RPM |
SRP017611_brain | 0 .00 RPM | 73 .60 RPM |
SRP017611_kidney | 0 .00 RPM | 309 .91 RPM |
SRP017611_liver | 0 .00 RPM | 71 .79 RPM |