RetrogeneDB ID: | retro_rnor_2740 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 9:69942498..69942879(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000047597 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cox5b | ||
Ensembl ID: | ENSRNOG00000016660 | ||
Aliases: | None | ||
Description: | Cytochrome c oxidase subunit 5B, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P12075] |
Percent Identity: | 72.93 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MASRLLRGVGALAAQALRAHGPR-GVAATRSMASG-GGVPTDEEQATGLEREIMIAAQRGLDPYNMLPPK |
MASRLL.GVGA..AQ.LRAHGP..G.A.T.SMASG.GGVP.DEEQ.TG.EREIMIAAQ.GLDPYN.LPPK | |
Retrocopy | MASRLLHGVGAFVAQSLRAHGPV<GAAQTHSMASGEGGVPIDEEQDTGPEREIMIAAQKGLDPYNRLPPK |
Parental | AASGTKEDPNLVPSVSN-KRIVGCICEEDNCTVIWFWLH-QGESQRCPNCGTHYKLVPYQMVH |
AAS..KEDPNLVPS....KRI.G.ICEEDN.TVI.FWLH.Q......P..GTHYKLVP.QM.H | |
Retrocopy | AASSVKEDPNLVPSIAK<KRIAGSICEEDNYTVICFWLH<QRQEAEIP--GTHYKLVPHQMAH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 66 .22 RPM |
SRP017611_kidney | 0 .00 RPM | 140 .19 RPM |
SRP017611_liver | 0 .00 RPM | 57 .02 RPM |