RetrogeneDB ID: | retro_ecab_189 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 1:133130324..133130706(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COX5B | ||
Ensembl ID: | ENSECAG00000007968 | ||
Aliases: | None | ||
Description: | cytochrome c oxidase subunit Vb [Source:HGNC Symbol;Acc:2269] |
Percent Identity: | 76.34 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MASRLLRGAGALSAQALRARGPRGVAAVRSMASGGGVPT-DDEQATGLEREVLMAARKGLDPYNILAPKA |
MASRLLRGAG.L...ALRARG..GVA.V.SMASGGGVP..D....TGLEREVL.A..KGLD..N.LAPK. | |
Retrocopy | MASRLLRGAGVLAV*ALRARGAHGVAVVCSMASGGGVPM<DEQ-VTGLEREVLGAVWKGLDLHNMLAPKT |
Parental | ASGTKEDPNLVPSITNKRIVGCICEEDNSAVIWFWLHKGETQRCPSCGAHYKL-VPHQLAH |
ASGTKEDPNLVPSITNK.IVGC.CEEDNSA.IWFWLHKGETQ.C..C..HYKL.VP.QLAH | |
Retrocopy | ASGTKEDPNLVPSITNKPIVGCTCEEDNSALIWFWLHKGETQQCSNC*THYKL<VPPQLAH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 29 .63 RPM |
SRP021940_cerebellum | 0 .05 RPM | 125 .31 RPM |
SRP021940_embryo | 0 .05 RPM | 69 .71 RPM |
SRP021940_placental_villous | 0 .00 RPM | 89 .29 RPM |
SRP021940_synovial_membrane | 0 .05 RPM | 52 .71 RPM |
SRP021940_testis | 0 .00 RPM | 165 .23 RPM |