RetrogeneDB ID: | retro_cfam_1284 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 29:482657..483030(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COX5B | ||
Ensembl ID: | ENSCAFG00000002387 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris cytochrome c oxidase polypeptide Vb (COX5B), nuclear gene encoding mitochondrial protein, mRNA. [Source:RefSeq mRNA;Acc:NM_001144130] |
Percent Identity: | 64.89 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MASRLLRGVGALAAQALRARGPNGVAAVRSMASGGGVPTDDEQATGLEREVMM-AARKGLDPYNILAPKA |
MAS.L...VGALA.Q.LRA.GPN.V..V.SMASGGG....D.Q.TGLERE.M..A..KGL..YN.L.PKA | |
Retrocopy | MASMLFYRVGALAIQVLRACGPNEVPIVCSMASGGG----D*QVTGLEREIMK<AVWKGLAQYNMLCPKA |
Parental | AAGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTHYKLVP-HQLAH |
A.GTKED.NLVPSITNKR..G..CEEDNS...WF.L.K...QRC.SCG.HYK....HQLAH | |
Retrocopy | ASGTKEDSNLVPSITNKRKEGFTCEEDNSAITWF*LYKSKIQRCLSCGIHYKVMS<HQLAH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 115 .71 RPM |
SRP017611_brain | 0 .00 RPM | 73 .60 RPM |
SRP017611_kidney | 0 .00 RPM | 309 .91 RPM |
SRP017611_liver | 0 .00 RPM | 71 .79 RPM |