Parental gene: | COX5B, ENSG00000135940 |
| Aliases: | None |
| Description: | cytochrome c oxidase subunit Vb [Source:HGNC Symbol;Acc:2269] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 2:98262502..98264846(+) |
>ENSG00000135940
ATGGCTTCAAGGTTACTTCGCGGAGCTGGAACGCTGGCCGCGCAGGCCCTGAGGGCTCGCGGCCCCAGTGGCGCGGCCGC
GATGCGCTCCATGGCATCTGGAGGTGGTGTTCCCACTGATGAAGAGCAGGCGACTGGGTTGGAGAGGGAGATCATGCTGG
CTGCAAAGAAGGGACTGGACCCATACAATGTACTGGCCCCAAAGGGAGCTTCAGGCACCAGGGAAGACCCTAATTTAGTC
CCCTCCATCTCCAACAAGAGAATAGTAGGCTGCATCTGTGAAGAGGACAATACCAGCGTCGTCTGGTTTTGGCTGCACAA
AGGCGAGGCCCAGCGATGCCCCCGCTGTGGAGCCCATTACAAGCTGGTGCCCCAGCAGCTGGCACACTGA
ATGGCTTCAAGGTTACTTCGCGGAGCTGGAACGCTGGCCGCGCAGGCCCTGAGGGCTCGCGGCCCCAGTGGCGCGGCCGC
GATGCGCTCCATGGCATCTGGAGGTGGTGTTCCCACTGATGAAGAGCAGGCGACTGGGTTGGAGAGGGAGATCATGCTGG
CTGCAAAGAAGGGACTGGACCCATACAATGTACTGGCCCCAAAGGGAGCTTCAGGCACCAGGGAAGACCCTAATTTAGTC
CCCTCCATCTCCAACAAGAGAATAGTAGGCTGCATCTGTGAAGAGGACAATACCAGCGTCGTCTGGTTTTGGCTGCACAA
AGGCGAGGCCCAGCGATGCCCCCGCTGTGGAGCCCATTACAAGCTGGTGCCCCAGCAGCTGGCACACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 71 .19 RPM |
| bodymap2_lung | 52 .71 RPM |
| bodymap2_breast | 78 .93 RPM |
| bodymap2_adipose | 48 .20 RPM |
| bodymap2_adrenal | 69 .06 RPM |
| bodymap2_skeletal_muscle | 137 .48 RPM |
| bodymap2_thyroid | 83 .10 RPM |
| bodymap2_prostate | 88 .40 RPM |
| bodymap2_colon | 76 .51 RPM |
| bodymap2_testis | 61 .14 RPM |
| bodymap2_brain | 88 .88 RPM |
| bodymap2_heart | 197 .09 RPM |
| bodymap2_white_blood_cells | 47 .53 RPM |
| bodymap2_lymph_node | 47 .68 RPM |
| bodymap2_ovary | 40 .15 RPM |
| bodymap2_kidney | 112 .75 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000005242 | ortholog_one2many | 7 retrogenes | |
| Bos taurus | ENSBTAG00000018542 | ortholog_one2many | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000002387 | ortholog_one2one | 8 retrogenes | |
| Callithrix jacchus | ENSCJAG00000016911 | ortholog_one2one | 6 retrogenes | |
| Dipodomys ordii | ENSDORG00000014994 | ortholog_one2one | 3 retrogenes | |
| Equus caballus | ENSECAG00000007968 | ortholog_one2one | 3 retrogenes | |
| Erinaceus europaeus | ENSEEUG00000000258 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000001704 | ortholog_one2one | 7 retrogenes | |
| Gorilla gorilla | ENSGGOG00000001142 | ortholog_one2one | 6 retrogenes | |
| Loxodonta africana | ENSLAFG00000009386 | ortholog_one2one | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000005855 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000014512 | ortholog_one2many | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000011327 | ortholog_one2one | 8 retrogenes | |
| Mus musculus | ENSMUSG00000061518 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000011668 | ortholog_one2many | 5 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000017085 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000016840 | ortholog_one2one | 3 retrogenes | |
| Ochotona princeps | ENSOPRG00000002030 | ortholog_one2one | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000012078 | ortholog_one2one | 6 retrogenes | |
| Pan troglodytes | ENSPTRG00000012257 | ortholog_one2one | 7 retrogenes | |
| Rattus norvegicus | ENSRNOG00000016660 | ortholog_one2many | 2 retrogenes | |
| Sorex araneus | ENSSARG00000011275 | ortholog_one2one | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000017358 | ortholog_one2one | 3 retrogenes | |
| Sus scrofa | ENSSSCG00000008195 | ortholog_one2many | 4 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000010980 | ortholog_one2many | 3 retrogenes | |
| Tupaia belangeri | ENSTBEG00000012130 | ortholog_one2one | 4 retrogenes | |
| Tursiops truncatus | ENSTTRG00000013490 | ortholog_one2one | 5 retrogenes | |
| Vicugna pacos | ENSVPAG00000006560 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_270 | 62.26 | 82.17 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_903 | 61.83 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_hsap_997 | 61.25 | 60.47 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_hsap_1295 | 69.39 | 74.42 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_hsap_3058 | 70.00 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_hsap_3667 | 67.90 | 62.79 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_hsap_3908 | 62.79 | 98.45 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000135940 retrocopies