RetrogeneDB ID: | retro_sscr_306 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 12:50594657..50594907(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COX5B | ||
Ensembl ID: | ENSSSCG00000008195 | ||
Aliases: | None | ||
Description: | Sus scrofa mitochondrial cytochrome c oxidase subunit Vb (Cox5b), nuclear gene encoding mitochondrial protein, mRNA. [Source:RefSeq mRNA;Acc:NM_001007517] |
Percent Identity: | 78.82 % |
Parental protein coverage: | 65.12 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | GLEREVMMAARKGLDPYNILAPKAASGTKEDPNLV-PSITNKRIVGCICEEDNSTVIWFWVHKGETQRCP |
GLER.V..AARKG.DPYN.LAPKAAS.TKEDP.LV.PSI.NK.IVGCICE.DN..VIWFWVH.GETQRCP | |
Retrocopy | GLERDVRTAARKGRDPYNMLAPKAASRTKEDPHLV>PSIPNKQIVGCICEDDNRAVIWFWVHQGETQRCP |
Parental | SCGTHYKLVSHQLAH |
SCG.HYKL...QLAH | |
Retrocopy | SCGAHYKLLP-QLAH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 149 .32 RPM |
SRP014902_testis | 0 .00 RPM | 102 .55 RPM |
SRP018288_heart | 0 .00 RPM | 372 .13 RPM |
SRP018288_kidney | 0 .00 RPM | 349 .01 RPM |
SRP018288_liver | 0 .00 RPM | 156 .87 RPM |
SRP018288_lung | 0 .00 RPM | 46 .94 RPM |
SRP018856_adipose | 0 .00 RPM | 231 .38 RPM |
SRP035408_brain | 0 .00 RPM | 175 .19 RPM |
SRP035408_liver | 0 .00 RPM | 160 .17 RPM |