RetrogeneDB ID: | retro_ecab_674 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 27:22862643..22862965(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COX5B | ||
Ensembl ID: | ENSECAG00000007968 | ||
Aliases: | None | ||
Description: | cytochrome c oxidase subunit Vb [Source:HGNC Symbol;Acc:2269] |
Percent Identity: | 67.27 % |
Parental protein coverage: | 83.72 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | PRGVAAVRSMASGGGVPTDDEQA-TGLEREVLMAARKGLDPYNILAPKAASGTK-EDPNLVPSITNKRIV |
P.GV..V..MASGGGVPT.DEQ...G.EREV.MAA.KGL...N.LAP.A.SGTK.ED.NLVPSITNK.IV | |
Retrocopy | PKGVSVVCWMASGGGVPTVDEQT<NGVEREVMMAAWKGLE*FNMLAPMAISGTK<EDSNLVPSITNK*IV |
Parental | GCICEEDNSAVIWFWLHKGETQRCPSCGAHYKLVPHQLAH |
GC.CEED..AV..F..HKG.TQ.CP.C..HY.L.PHQLA. | |
Retrocopy | GCVCEEDKTAVTQFRPHKGKTQHCPNCETHYELMPHQLAY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 29 .63 RPM |
SRP021940_cerebellum | 0 .00 RPM | 125 .31 RPM |
SRP021940_embryo | 0 .00 RPM | 69 .71 RPM |
SRP021940_placental_villous | 0 .00 RPM | 89 .29 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 52 .71 RPM |
SRP021940_testis | 0 .06 RPM | 165 .23 RPM |
Species | RetrogeneDB ID |
---|---|
Sus scrofa | retro_sscr_562 |
Canis familiaris | retro_cfam_712 |