RetrogeneDB ID: | retro_eeur_402 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_285314:3692..3941(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COX5B | ||
Ensembl ID: | ENSEEUG00000000258 | ||
Aliases: | None | ||
Description: | cytochrome c oxidase subunit Vb [Source:HGNC Symbol;Acc:2269] |
Percent Identity: | 65.48 % |
Parental protein coverage: | 64.06 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | LEREIMLAARKGLDPYNMLPPPKVAAGTKEDPNLVPSITNKRIVGCIXXXXXXXVIWFWLHK-ETQRCPG |
LE.E.M..A.KGLDPYNML.P.K.A..T.ED.NLVPSI...R.VGCI.......VIWFWLHK.ETQ.CP. | |
Retrocopy | LEPETMMVAFKGLDPYNMLAP-KAASDTNEDLNLVPSIFKERRVGCICEEDNSAVIWFWLHKRETQ*CPS |
Parental | C-THYKLVPHQLAH |
C.T.YKLV.HQLAH | |
Retrocopy | CGTYYKLVSHQLAH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .16 RPM | 40 .93 RPM |
SRP017611_kidney | 0 .75 RPM | 153 .78 RPM |
SRP017611_liver | 0 .00 RPM | 88 .11 RPM |