RetrogeneDB ID: | retro_fcat_1961 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:125881434..125881645(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COX5B | ||
Ensembl ID: | ENSFCAG00000001704 | ||
Aliases: | None | ||
Description: | cytochrome c oxidase subunit Vb [Source:HGNC Symbol;Acc:2269] |
Percent Identity: | 69.86 % |
Parental protein coverage: | 55.04 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | VRGPNGVAAVRSMASGGGVPTD-DEQATGLEREVMMAARKGLDPYNMLAPK-AASGTKEDPNLVPSITNK |
..GP..V..VR.MASGG.VP....EQ.TGLEREVMMAA.KG.DPY.MLAP..AAS.TKEDP..VPSITNK | |
Retrocopy | LHGPSQVTLVRCMASGGSVPAE<GEQVTGLEREVMMAAQKGPDPYKMLAPR<AASVTKEDPTFVPSITNK |
Parental | RIV |
.IV | |
Retrocopy | *IV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 105 .94 RPM |
SRP017611_kidney | 0 .00 RPM | 172 .42 RPM |
SRP017611_liver | 0 .00 RPM | 64 .60 RPM |