Parental gene: | COX5B, ENSCAFG00000002387 |
| Aliases: | None |
| Description: | Canis lupus familiaris cytochrome c oxidase polypeptide Vb (COX5B), nuclear gene encoding mitochondrial protein, mRNA. [Source:RefSeq mRNA;Acc:NM_001144130] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 10:44979739..44985971(-) |
>ENSCAFG00000002387
ATGGCTTCAAGGTTACTTCGCGGAGTTGGAGCGCTGGCCGCGCAGGCCCTCAGGGCTCGCGGTCCCAATGGAGTCGCCGC
GGTGCGCTCAATGGCGTCTGGAGGTGGTGTTCCTACTGATGACGAGCAGGCGACAGGGCTGGAGAGGGAGGTCATGATGG
CCGCACGGAAGGGACTGGACCCATACAATATTCTAGCCCCAAAGGCAGCTGCAGGCACCAAAGAAGACCCTAATTTAGTC
CCATCTATCACCAACAAGCGAATAGTGGGCTGCATCTGTGAAGAGGACAATAGTACCGTCATCTGGTTTTGGCTGCACAA
AGGCGAGGCCCAGCGATGCCCTAGCTGTGGAACCCATTACAAGCTGGTGCCCCACCAGTTGGCCCACTGA
ATGGCTTCAAGGTTACTTCGCGGAGTTGGAGCGCTGGCCGCGCAGGCCCTCAGGGCTCGCGGTCCCAATGGAGTCGCCGC
GGTGCGCTCAATGGCGTCTGGAGGTGGTGTTCCTACTGATGACGAGCAGGCGACAGGGCTGGAGAGGGAGGTCATGATGG
CCGCACGGAAGGGACTGGACCCATACAATATTCTAGCCCCAAAGGCAGCTGCAGGCACCAAAGAAGACCCTAATTTAGTC
CCATCTATCACCAACAAGCGAATAGTGGGCTGCATCTGTGAAGAGGACAATAGTACCGTCATCTGGTTTTGGCTGCACAA
AGGCGAGGCCCAGCGATGCCCTAGCTGTGGAACCCATTACAAGCTGGTGCCCCACCAGTTGGCCCACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 73 .60 RPM |
| SRP017611_kidney | 309 .91 RPM |
| SRP017611_liver | 71 .79 RPM |
| SRP012049_cerebellum | 115 .71 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000005242 | ortholog_one2many | 7 retrogenes | |
| Bos taurus | ENSBTAG00000018542 | ortholog_one2many | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000016911 | ortholog_one2one | 6 retrogenes | |
| Dipodomys ordii | ENSDORG00000014994 | ortholog_one2one | 3 retrogenes | |
| Equus caballus | ENSECAG00000007968 | ortholog_one2one | 3 retrogenes | |
| Erinaceus europaeus | ENSEEUG00000000258 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000001704 | ortholog_one2one | 7 retrogenes | |
| Homo sapiens | ENSG00000135940 | ortholog_one2one | 7 retrogenes | |
| Gorilla gorilla | ENSGGOG00000001142 | ortholog_one2one | 6 retrogenes | |
| Loxodonta africana | ENSLAFG00000009386 | ortholog_one2one | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000005855 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000014512 | ortholog_one2many | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000011327 | ortholog_one2one | 8 retrogenes | |
| Mus musculus | ENSMUSG00000061518 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000011668 | ortholog_one2many | 5 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000017085 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000016840 | ortholog_one2one | 3 retrogenes | |
| Ochotona princeps | ENSOPRG00000002030 | ortholog_one2one | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000012078 | ortholog_one2one | 6 retrogenes | |
| Pan troglodytes | ENSPTRG00000012257 | ortholog_one2one | 7 retrogenes | |
| Rattus norvegicus | ENSRNOG00000016660 | ortholog_one2many | 2 retrogenes | |
| Sorex araneus | ENSSARG00000011275 | ortholog_one2one | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000017358 | ortholog_one2one | 3 retrogenes | |
| Sus scrofa | ENSSSCG00000008195 | ortholog_one2many | 4 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000010980 | ortholog_one2many | 3 retrogenes | |
| Tupaia belangeri | ENSTBEG00000012130 | ortholog_one2one | 4 retrogenes | |
| Tursiops truncatus | ENSTTRG00000013490 | ortholog_one2one | 5 retrogenes | |
| Vicugna pacos | ENSVPAG00000006560 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_398 | 68.18 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_712 | 51.16 | 65.62 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cfam_1231 | 95.35 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cfam_1284 | 64.89 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cfam_1307 | 65.12 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cfam_1494 | 65.38 | 99.22 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_cfam_1779 | 65.77 | 86.05 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_cfam_2130 | 67.42 | 66.67 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000002387 retrocopies