RetrogeneDB ID: | retro_sscr_562 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 17:8459024..8459388(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COX5B | ||
Ensembl ID: | ENSSSCG00000008195 | ||
Aliases: | None | ||
Description: | Sus scrofa mitochondrial cytochrome c oxidase subunit Vb (Cox5b), nuclear gene encoding mitochondrial protein, mRNA. [Source:RefSeq mRNA;Acc:NM_001007517] |
Percent Identity: | 58.59 % |
Parental protein coverage: | 95.35 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | SRLLRGAGALA-AQTLRARGPNGVAVVRSMASGGGVPTDEEQATGLER-EVMMAARK-GLDPY-NILAPK |
SRLL.....LA.A..LRA..P.G.A.V.SMASGG..PTDE.Q..GLER.E.MMA..K.G..P.....APK | |
Retrocopy | SRLLCRTETLA>AKALRAHSPSGIAAVCSMASGGSFPTDEKQTAGLER<ESMMASWK<GIGPT*YAIAPK |
Parental | AASGTK-EDPNLVPSITNKRIVGCICEEDNSTVIWFWVHKGETQRCPSCGTHYKLVSH |
AASGTK.E.P....S.TNK.IV.CICEEDNS..I.F..HKG...RCP.CG..Y.LVS. | |
Retrocopy | AASGTK<ERPSFSSS-TNK*IVCCICEEDNSAAISFRLHKGVFHRCPKCGI-YRLVSY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 149 .32 RPM |
SRP014902_testis | 0 .28 RPM | 102 .55 RPM |
SRP018288_heart | 0 .00 RPM | 372 .13 RPM |
SRP018288_kidney | 0 .00 RPM | 349 .01 RPM |
SRP018288_liver | 0 .00 RPM | 156 .87 RPM |
SRP018288_lung | 0 .00 RPM | 46 .94 RPM |
SRP018856_adipose | 0 .00 RPM | 231 .38 RPM |
SRP035408_brain | 0 .00 RPM | 175 .19 RPM |
SRP035408_liver | 0 .00 RPM | 160 .17 RPM |
Species | RetrogeneDB ID |
---|---|
Canis familiaris | retro_cfam_712 |
Equus caballus | retro_ecab_674 |