RetrogeneDB ID: | retro_ocun_508 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 12:66295770..66296055(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COX5B | ||
Ensembl ID: | ENSOCUG00000017085 | ||
Aliases: | None | ||
Description: | cytochrome c oxidase subunit Vb [Source:HGNC Symbol;Acc:2269] |
Percent Identity: | 72.92 % |
Parental protein coverage: | 74.42 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | SGGGVPTDEEQATGLEREVMMAARKGLDPYNMLPPKAASGTKEDPNLVPSITNKRIVGCICEEDNSAVIW |
S.GGVPTDE.Q..GLEREVM..A.KGL....ML.P.AAS.TKE.PNLVP.ITNK..V..IC.EDNSA..W | |
Retrocopy | SRGGVPTDEGQTPGLEREVM-TAWKGLGTCDMLHPQAASRTKEEPNLVPFITNK*TVDYICKEDNSAITW |
Parental | FWLHKGETQRCPNCGTHYKLVPHQLA |
FWLHKGETQ..P.CGTHYKLVPHQLA | |
Retrocopy | FWLHKGETQCRPHCGTHYKLVPHQLA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 132 .07 RPM |
SRP017611_kidney | 0 .00 RPM | 213 .46 RPM |
SRP017611_liver | 0 .00 RPM | 38 .77 RPM |