RetrogeneDB ID: | retro_ecab_750 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 30:2066805..2067248(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CALM2 | ||
Ensembl ID: | ENSECAG00000008396 | ||
Aliases: | CALM2, CALM | ||
Description: | calmodulin 2 (phosphorylase kinase, delta) [Source:HGNC Symbol;Acc:1445] |
Percent Identity: | 78. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MADQLTEEQIAEFK-EAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF |
..DQLTEEQIAE.K.E.FSLF..DG..T.TTKELGTVMR.L.QNPTEAEL.DMINEV.ADGNG..DFPEF | |
Retrocopy | VVDQLTEEQIAELK<ETFSLFNRDGNRTVTTKELGTVMRCLVQNPTEAEL*DMINEVGADGNGMFDFPEF |
Parental | LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNY |
LT.MARKMKD.DS.EEIREAF.VFDKDGNGY..AA.L.HV..N.G..LTDEEV.EMIREADID.DGQVNY | |
Retrocopy | LTLMARKMKDSDSDEEIREAFPVFDKDGNGYTCAAKLQHVI-NRGVQLTDEEVHEMIREADIDDDGQVNY |
Parental | EEFVQMMTAK |
EEFVQ.M.AK | |
Retrocopy | EEFVQTMRAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 58 .97 RPM |
SRP021940_cerebellum | 0 .00 RPM | 119 .86 RPM |
SRP021940_embryo | 0 .05 RPM | 121 .88 RPM |
SRP021940_placental_villous | 0 .00 RPM | 113 .40 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 53 .48 RPM |
SRP021940_testis | 0 .00 RPM | 92 .72 RPM |