RetrogeneDB ID: | retro_opri_16 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | GeneScaffold_4350:155134..155584(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOPRG00000004351 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CALM2 | ||
Ensembl ID: | ENSOPRG00000015478 | ||
Aliases: | None | ||
Description: | calmodulin 2 (phosphorylase kinase, delta) [Source:HGNC Symbol;Acc:1445] |
Percent Identity: | 84.56 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL |
MADQLTEEQ.A.FKEAFSLFDKDGDG.ITT.ELGTVMRSLGQNPTEAELQDM..E.D.DG.GT.DF.EFL | |
Retrocopy | MADQLTEEQVATFKEAFSLFDKDGDGSITTQELGTVMRSLGQNPTEAELQDMVREIDRDGSGTVDFSEFL |
Parental | TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE |
.MM.R.MKDT.SEEEIREAFRVFDKDGNGY.SAAELRHVMT.LGEKL.DEEVDEMIR.ADIDGDGQVNYE | |
Retrocopy | GMMVRQMKDTHSEEEIREAFRVFDKDGNGYVSAAELRHVMTRLGEKLSDEEVDEMIRSADIDGDGQVNYE |
Parental | EFVQMMTAK |
EFV.M...K | |
Retrocopy | EFVHMLLSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |