RetrogeneDB ID: | retro_ocun_1468 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 9:20343348..20343766(+) | ||
Located in intron of: | ENSOCUG00000013474 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CALM | ||
Ensembl ID: | ENSOCUG00000002107 | ||
Aliases: | CALM2, CALM, CAM | ||
Description: | calmodulin 2 (phosphorylase kinase, delta) (CALM2), mRNA [Source:RefSeq mRNA;Acc:NM_001195640] |
Percent Identity: | 69.29 % |
Parental protein coverage: | 93.29 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MADQLTEEQIAEFKE-AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF |
MAD..TEEQI..FKE.AFS..DKD.D.TITTKELGT.M..LGQNP.E.ELQDMINEVDAD.NGT.DFPE. | |
Retrocopy | MADKMTEEQITKFKE>AFSVLDKDSDRTITTKELGTLMSHLGQNPIETELQDMINEVDADDNGTVDFPEL |
Parental | LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNY |
.T.M.RK.KD..SEE...EAF.VF.KDGN....A.EL.HV.T..G.K.T.EEVDEMIRE.D.D.DGQVNY | |
Retrocopy | QTVMTRKVKDGNSEEGTGEAFCVFNKDGNVSMRAPELCHVTTH*GGKKTSEEVDEMIREVDMDNDGQVNY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 1135 .56 RPM |
SRP017611_kidney | 0 .00 RPM | 196 .63 RPM |
SRP017611_liver | 0 .00 RPM | 73 .45 RPM |