RetrogeneDB - Parental gene ENSSTOG00000021814 details

							
>ENSSTOG00000021814
ATGGCTGACCAACTGACTGAAGAGCAGATTGCAGAATTCAAAGAAGCTTTTTCACTATTTGACAAGGATGGTGATGGAAC

TATAACAACAAAGGAATTGGGAACTGTAATGAGGTCTCTTGGGCAGAATCCCACAGAAGCAGAGTTACAGGACATGATTA

ATGAAGTAGATGCTGATGGTAATGGCACAATTGACTTCCCTGAATTTCTGACAATGATGGCAAGAAAAATGAAAGACACA

GACAGTGAAGAAGAAATTAGAGAAGCATTCCGTGTGTTTGATAAGGATGGCAATGGCTATATTAGTGCAGCAGAACTTCG

CCATGTGATGACAAACCTTGGAGAGAAGTTAACAGATGAAGAGGTTGATGAAATGATCAGGGAAGCAGATATTGATGGTG

ATGGTCAAGTAAACTATGAAGAGTTTGTACAAATGATGACAGCAAAGTGA

Species	Parental gene accession	Homology type	Retrogenes number
Anolis carolinensis	ENSACAG00000015712	possible_ortholog	1 retrogene	retro_acar_45,
Ailuropoda melanoleuca	ENSAMEG00000006204	ortholog_one2one	2 retrogenes	retro_amel_63, retro_amel_72,
Choloepus hoffmanni	ENSCHOG00000008245	ortholog_one2one	6 retrogenes	retro_chof_1940, retro_chof_2261, retro_chof_367, retro_chof_735, retro_chof_833, retro_chof_965,
Callithrix jacchus	ENSCJAG00000000638	ortholog_one2one	4 retrogenes	retro_cjac_1039, retro_cjac_1401, retro_cjac_2859, retro_cjac_4097,
Cavia porcellus	ENSCPOG00000012181	ortholog_one2many	3 retrogenes	retro_cpor_1012, retro_cpor_87, retro_cpor_89,
Equus caballus	ENSECAG00000008396	ortholog_one2one	4 retrogenes	retro_ecab_15, retro_ecab_59, retro_ecab_750, retro_ecab_882,
Echinops telfairi	ENSETEG00000009377	possible_ortholog	5 retrogenes	retro_etel_1062, retro_etel_1542, retro_etel_1812, retro_etel_587, retro_etel_854,
Ficedula albicollis	ENSFALG00000012828	ortholog_one2one	1 retrogene	retro_falb_16,
Felis catus	ENSFCAG00000029141	ortholog_one2one	5 retrogenes	retro_fcat_1926, retro_fcat_591, retro_fcat_629, retro_fcat_87, retro_fcat_88,
Gadus morhua	ENSGMOG00000009342	possible_ortholog	1 retrogene	retro_gmor_23,
Latimeria chalumnae	ENSLACG00000005059	possible_ortholog	1 retrogene	retro_lcha_53,
Loxodonta africana	ENSLAFG00000009865	possible_ortholog	1 retrogene	retro_lafr_655,
Myotis lucifugus	ENSMLUG00000029016	ortholog_one2one	6 retrogenes	retro_mluc_13, retro_mluc_1732, retro_mluc_18, retro_mluc_19, retro_mluc_2207, retro_mluc_2258,
Macaca mulatta	ENSMMUG00000017466	ortholog_one2many	1 retrogene	retro_mmul_256,
Monodelphis domestica	ENSMODG00000009222	possible_ortholog	1 retrogene	retro_mdom_1126,
Mustela putorius furo	ENSMPUG00000012061	ortholog_one2one	4 retrogenes	retro_mputfur_1207, retro_mputfur_21, retro_mputfur_838, retro_mputfur_942,
Nomascus leucogenys	ENSNLEG00000016954	ortholog_one2one	3 retrogenes	retro_nleu_118, retro_nleu_2563, retro_nleu_2862,
Oryctolagus cuniculus	ENSOCUG00000002107	ortholog_one2one	2 retrogenes	retro_ocun_1468, retro_ocun_84,
Otolemur garnettii	ENSOGAG00000008824	ortholog_one2many	6 retrogenes	retro_ogar_1126, retro_ogar_1196, retro_ogar_1432, retro_ogar_1535, retro_ogar_209, retro_ogar_2326,
Ochotona princeps	ENSOPRG00000015478	ortholog_one2one	7 retrogenes	retro_opri_1129, retro_opri_1155, retro_opri_16, retro_opri_40, retro_opri_506, retro_opri_830, retro_opri_86,
Petromyzon marinus	ENSPMAG00000003323	possible_ortholog	1 retrogene	retro_pmar_12,
Pongo abelii	ENSPPYG00000012430	ortholog_one2many	5 retrogenes	retro_pabe_1068, retro_pabe_1133, retro_pabe_115, retro_pabe_45, retro_pabe_599,
Pelodiscus sinensis	ENSPSIG00000013173	possible_ortholog	1 retrogene	retro_psin_9,
Pan troglodytes	ENSPTRG00000011901	ortholog_one2one	4 retrogenes	retro_ptro_1195, retro_ptro_2623, retro_ptro_83, retro_ptro_881,
Pteropus vampyrus	ENSPVAG00000005183	ortholog_one2one	2 retrogenes	retro_pvam_558, retro_pvam_560,
Sorex araneus	ENSSARG00000008731	ortholog_one2one	1 retrogene	retro_sara_119,
Sus scrofa	ENSSSCG00000008433	ortholog_one2many	1 retrogene	retro_sscr_228,
Ictidomys tridecemlineatus	ENSSTOG00000014352	within_species_paralog	1 retrogene	retro_itri_1018,
Tupaia belangeri	ENSTBEG00000000569	ortholog_one2one	17 retrogenes	retro_tbel_1450, retro_tbel_24, retro_tbel_2418, retro_tbel_258, retro_tbel_2612, retro_tbel_2856, retro_tbel_2933, retro_tbel_3150, retro_tbel_3195, retro_tbel_3956, retro_tbel_4141, retro_tbel_4171, retro_tbel_4212, retro_tbel_4324, retro_tbel_675, retro_tbel_722, retro_tbel_765,
Taeniopygia guttata	ENSTGUG00000002581	ortholog_one2one	1 retrogene	retro_tgut_6,
Tarsius syrichta	ENSTSYG00000012564	ortholog_one2one	5 retrogenes	retro_tsyr_1641, retro_tsyr_2012, retro_tsyr_2128, retro_tsyr_2148, retro_tsyr_576,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_itri_37	87.92	100.00	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_itri_68	57.72	100.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_itri_433	79.10	88.59	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_itri_778	87.33	100.00	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_itri_859	63.36	87.25	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_itri_1048	86.75	100.00	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_itri_1473	61.90	83.22	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSSTOG00000021814 retrocopies

Parental gene:	CALM2, ENSSTOG00000021814
Aliases:	None
Description:	calmodulin 2 (phosphorylase kinase, delta) [Source:HGNC Symbol;Acc:1445]
Organism:	*Squirrel (Ictidomys tridecemlineatus)*
Coordinates:	JH393318.1:5207958..5223791(+)

Parental gene:

CALM2, ENSSTOG00000021814