RetrogeneDB ID:

retro_tsyr_576

Retrocopy
location
Organism:Tarsier (Tarsius syrichta)
Coordinates:scaffold_142553:2466..2790(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:CALM2
Ensembl ID:ENSTSYG00000012564
Aliases:None
Description:calmodulin 2 (phosphorylase kinase, delta) [Source:HGNC Symbol;Acc:1445]


Retrocopy-Parental alignment summary:






>retro_tsyr_576
GCTGACCAGCTGACTGAAGAGCAGATTGCAGAATTCAAAGAAGCTTTTTTGCTATTTGACAAGAATGATGATGGAACTTT
AACAACAAAAGAATTGGGAACTGTAAAGAGGTCTCTTGGGCAGAATCACACAGAAGCAGAGTTACAGGACATGATTAATG
TAGATGCTGATGGTAATGGCACAATTGACTTCCCTGAATTTCTGACAATGATGGCAAGAAAAATGAAAGACACAACCAGT
GAAGAAGAAATTAGAGAAGCATTCCATGTATTTGATAAGGATGGCAATGGCTATATGAGTGCAGCAGAGCTTTGCCATGT
GATG

ORF - retro_tsyr_576 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 89.91 %
Parental protein coverage: 73.65 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT
ADQLTEEQIAEFKEAF.LFDK..DGT.TTKELGTV.RSLGQN.TEAELQDMIN.VDADGNGTIDFPEFLT
RetrocopyADQLTEEQIAEFKEAFLLFDKNDDGTLTTKELGTVKRSLGQNHTEAELQDMIN-VDADGNGTIDFPEFLT
ParentalMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVM
MMARKMKDT.SEEEIREAF.VFDKDGNGY.SAAEL.HVM
RetrocopyMMARKMKDTTSEEEIREAFHVFDKDGNGYMSAAELCHVM

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_576 was not experimentally validated.

Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 31 parental genes, and 109 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000157121 retrocopy
Ailuropoda melanoleuca ENSAMEG000000062042 retrocopies
Choloepus hoffmanni ENSCHOG000000082456 retrocopies
Callithrix jacchus ENSCJAG000000006384 retrocopies
Cavia porcellus ENSCPOG000000121813 retrocopies
Equus caballus ENSECAG000000083964 retrocopies
Echinops telfairi ENSETEG000000093775 retrocopies
Ficedula albicollis ENSFALG000000128281 retrocopy
Felis catus ENSFCAG000000291415 retrocopies
Gadus morhua ENSGMOG000000093421 retrocopy
Latimeria chalumnae ENSLACG000000050591 retrocopy
Loxodonta africana ENSLAFG000000098651 retrocopy
Myotis lucifugus ENSMLUG000000290166 retrocopies
Macaca mulatta ENSMMUG000000174661 retrocopy
Monodelphis domestica ENSMODG000000092221 retrocopy
Mustela putorius furoENSMPUG000000120614 retrocopies
Nomascus leucogenys ENSNLEG000000169543 retrocopies
Oryctolagus cuniculus ENSOCUG000000021072 retrocopies
Otolemur garnettii ENSOGAG000000088246 retrocopies
Ochotona princeps ENSOPRG000000154787 retrocopies
Petromyzon marinus ENSPMAG000000033231 retrocopy
Pongo abelii ENSPPYG000000124305 retrocopies
Pelodiscus sinensis ENSPSIG000000131731 retrocopy
Pan troglodytes ENSPTRG000000119014 retrocopies
Pteropus vampyrus ENSPVAG000000051832 retrocopies
Sorex araneus ENSSARG000000087311 retrocopy
Sus scrofa ENSSSCG000000084331 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000218147 retrocopies
Tupaia belangeri ENSTBEG0000000056917 retrocopies
Taeniopygia guttata ENSTGUG000000025811 retrocopy
Tarsius syrichta ENSTSYG00000012564 5 retrocopies



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