RetrogeneDB ID: | retro_fcat_629 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:77002514..77002943(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CALM2 | ||
Ensembl ID: | ENSFCAG00000029141 | ||
Aliases: | None | ||
Description: | calmodulin 2 (phosphorylase kinase, delta) [Source:HGNC Symbol;Acc:1445] |
Percent Identity: | 82.52 % |
Parental protein coverage: | 95.97 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL |
MADQLTEE.IAE.KEAF.LFDKDG.G..TT...GTV.RSLGQNPTE.ELQDMIN.VDAD..GTI.FPEFL | |
Retrocopy | MADQLTEEKIAELKEAFFLFDKDGGGAVTTRKFGTVVRSLGQNPTEDELQDMINKVDADNVGTIEFPEFL |
Parental | TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE |
TM.ARKMK..DS.EEIR.AF.VFDKD.NG.ISAAEL.HVMTNLGEKLTDEEV.EMIREADIDGDGQVNYE | |
Retrocopy | TMTARKMKESDSKEEIRKAF*VFDKDINGRISAAELCHVMTNLGEKLTDEEVGEMIREADIDGDGQVNYE |
Parental | EFV |
EFV | |
Retrocopy | EFV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 912 .21 RPM |
SRP017611_kidney | 0 .00 RPM | 144 .49 RPM |
SRP017611_liver | 0 .00 RPM | 108 .97 RPM |