RetrogeneDB ID: | retro_fcat_1926 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:65217777..65218223(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000032005 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CALM2 | ||
Ensembl ID: | ENSFCAG00000029141 | ||
Aliases: | None | ||
Description: | calmodulin 2 (phosphorylase kinase, delta) [Source:HGNC Symbol;Acc:1445] |
Percent Identity: | 78. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL |
..DQLTE.QI.EFKEA.SLFDKDGDGTIT.KELGT.MRSLGQNPTE.ELQDM.NEVDA.GNGTI.FPE.L | |
Retrocopy | ITDQLTEHQISEFKEAVSLFDKDGDGTITSKELGTLMRSLGQNPTETELQDMTNEVDANGNGTINFPELL |
Parental | TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDE-MIREADIDGDGQVNY |
.MMA.K..DTD.E.EIREA..VFDKDG.GYIS.AEL.HVM.NLGEKLT..EVDE...READIDG.G.VNY | |
Retrocopy | IMMAIKIIDTDNEKEIREAYHVFDKDGKGYISVAELSHVMINLGEKLTHDEVDE<ILREADIDGAGWVNY |
Parental | EEFVQMMTAK |
.EFVQMMT.K | |
Retrocopy | KEFVQMMTSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 912 .21 RPM |
SRP017611_kidney | 0 .00 RPM | 144 .49 RPM |
SRP017611_liver | 0 .00 RPM | 108 .97 RPM |